View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18406_high_90 (Length: 238)

Name: NF18406_high_90
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18406_high_90
NF18406_high_90
[»] chr3 (16 HSPs)
chr3 (1-221)||(23696838-23697058)
chr3 (1-221)||(23715293-23715513)
chr3 (1-221)||(23733749-23733969)
chr3 (1-221)||(23752208-23752427)
chr3 (10-55)||(26006023-26006068)
chr3 (10-55)||(26555813-26555858)
chr3 (10-55)||(36055047-36055092)
chr3 (10-50)||(26293607-26293647)
chr3 (10-50)||(38682430-38682470)
chr3 (11-50)||(10067725-10067764)
chr3 (10-48)||(52024240-52024278)
chr3 (10-55)||(13662547-13662592)
chr3 (11-56)||(45926990-45927035)
chr3 (10-50)||(27593156-27593196)
chr3 (10-50)||(35730936-35730976)
chr3 (10-50)||(50900487-50900527)
[»] chr1 (17 HSPs)
chr1 (67-221)||(44194146-44194300)
chr1 (67-221)||(44308091-44308245)
chr1 (118-221)||(44315192-44315297)
chr1 (120-221)||(44300637-44300734)
chr1 (8-58)||(10896796-10896846)
chr1 (8-50)||(19007617-19007659)
chr1 (10-55)||(26882866-26882911)
chr1 (10-55)||(36402246-36402291)
chr1 (10-55)||(45318459-45318504)
chr1 (10-58)||(1928444-1928492)
chr1 (10-50)||(9831303-9831343)
chr1 (10-50)||(29208759-29208799)
chr1 (11-50)||(39757985-39758024)
chr1 (11-50)||(39763339-39763378)
chr1 (9-55)||(48194589-48194635)
chr1 (9-55)||(48203347-48203393)
chr1 (9-50)||(34772315-34772356)
[»] chr7 (9 HSPs)
chr7 (1-55)||(12253422-12253476)
chr7 (5-55)||(33474517-33474567)
chr7 (10-55)||(151857-151902)
chr7 (10-55)||(40097093-40097138)
chr7 (10-43)||(27418682-27418715)
chr7 (10-43)||(43057721-43057754)
chr7 (10-55)||(47915097-47915142)
chr7 (10-50)||(30110807-30110847)
chr7 (10-50)||(39301286-39301326)
[»] chr4 (14 HSPs)
chr4 (1-55)||(56397442-56397496)
chr4 (8-56)||(8584043-8584091)
chr4 (10-56)||(54509712-54509758)
chr4 (10-55)||(25935785-25935830)
chr4 (10-55)||(35261614-35261659)
chr4 (10-50)||(26336081-26336121)
chr4 (8-50)||(28847140-28847182)
chr4 (9-55)||(38230771-38230817)
chr4 (10-55)||(40143775-40143820)
chr4 (13-58)||(41761975-41762020)
chr4 (10-55)||(42218444-42218489)
chr4 (10-55)||(45332665-45332710)
chr4 (11-55)||(33450178-33450222)
chr4 (10-50)||(47685148-47685188)
[»] chr2 (14 HSPs)
chr2 (1-55)||(21736636-21736690)
chr2 (1-56)||(7488160-7488215)
chr2 (1-35)||(35172670-35172704)
chr2 (10-55)||(11534834-11534879)
chr2 (10-55)||(20157797-20157842)
chr2 (10-50)||(29940949-29940989)
chr2 (8-55)||(2288460-2288507)
chr2 (10-49)||(11998457-11998496)
chr2 (10-55)||(6289539-6289584)
chr2 (6-55)||(14920617-14920666)
chr2 (10-50)||(2372973-2373013)
chr2 (6-50)||(21987295-21987339)
chr2 (10-50)||(25343224-25343264)
chr2 (8-56)||(44914583-44914631)
[»] chr8 (13 HSPs)
chr8 (1-55)||(43488905-43488959)
chr8 (10-58)||(43605404-43605452)
chr8 (10-56)||(9209034-9209080)
chr8 (10-55)||(1606053-1606098)
chr8 (10-55)||(30382714-30382759)
chr8 (10-50)||(2112795-2112835)
chr8 (10-50)||(7148050-7148090)
chr8 (10-50)||(28619847-28619887)
chr8 (8-55)||(10802809-10802856)
chr8 (10-55)||(29260316-29260361)
chr8 (10-55)||(40265321-40265366)
chr8 (10-55)||(42274971-42275016)
chr8 (10-58)||(40013510-40013558)
[»] chr5 (3 HSPs)
chr5 (1-56)||(3604484-3604539)
chr5 (10-55)||(6828832-6828877)
chr5 (10-55)||(40410589-40410634)
[»] chr6 (5 HSPs)
chr6 (10-55)||(30877851-30877896)
chr6 (8-55)||(5957125-5957172)
chr6 (9-55)||(7100163-7100209)
chr6 (9-55)||(8794421-8794467)
chr6 (10-58)||(10644054-10644102)
[»] scaffold0016 (1 HSPs)
scaffold0016 (10-55)||(81822-81867)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23697058 - 23696838
Alignment:
Q  1 tcttttcataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccctaataaagagaaaaatgacacaagtgttcaattttccagcgaacc 100  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  23697058 tcttttcataaaaaagtctattaaaattctttgaaatttcaattcaatacacccataataaagaggaaaatgacacaagtgttcaattttccagcgaacc 23696959  T
Q  101 ccattgaagggaaatctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23696958 ccattgaagggaaatctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttca 23696859  T
Q  201 tttactataaaacaccccaac 221  Q
    |||||||||||||||||||||    
T  23696858 tttactataaaacaccccaac 23696838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23715513 - 23715293
Alignment:
Q  1 tcttttcataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccctaataaagagaaaaatgacacaagtgttcaattttccagcgaacc 100  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  23715513 tcttttcataaaaaagtctattaaaattctttgaaatttcaattcaatacacccataataaagaggaaaatgacacaagtgttcaattttccagcgaacc 23715414  T
Q  101 ccattgaagggaaatctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23715413 ccattgaagggaaatctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttca 23715314  T
Q  201 tttactataaaacaccccaac 221  Q
    |||||||||||||||||||||    
T  23715313 tttactataaaacaccccaac 23715293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23733969 - 23733749
Alignment:
Q  1 tcttttcataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccctaataaagagaaaaatgacacaagtgttcaattttccagcgaacc 100  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  23733969 tcttttcataaaaaagtctattaaaattctttgaaatttcaattcaatacacccataataaagaggaaaatgacacaagtgttcaattttccagcgaacc 23733870  T
Q  101 ccattgaagggaaatctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23733869 ccattgaagggaaatctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttca 23733770  T
Q  201 tttactataaaacaccccaac 221  Q
    |||||||||||||||||||||    
T  23733769 tttactataaaacaccccaac 23733749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23752427 - 23752208
Alignment:
Q  1 tcttttcataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccctaataaagagaaaaatgacacaagtgttcaattttccagcgaacc 100  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  23752427 tcttttcataaaaaagtctattaaaataatttgaaatctcaattcaatacacccataataaagaggaaaatgacacaagtgttcaattttccagcgaacc 23752328  T
Q  101 ccattgaagggaaatctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttcc 200  Q
    ||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23752327 ccatgtaagggaaa-ctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttcc 23752229  T
Q  201 tttactataaaacaccccaac 221  Q
    |||||||||||||||||||||    
T  23752228 tttactataaaacaccccaac 23752208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 26006023 - 26006068
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||||    
T  26006023 aaaaaagtcttttaaaatcctttgaaatctcaatccaatacacccc 26006068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 26555858 - 26555813
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||||    
T  26555858 aaaaaagtcttttaaaatcctttgaaatctcaatccaatacacccc 26555813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 36055047 - 36055092
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||||    
T  36055047 aaaaaagtcttttaaaatcctttgaaatctcaatccaatacacccc 36055092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 26293607 - 26293647
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||| ||||||||||||||||| ||||||||||||    
T  26293607 aaaaaagtcttttaaaatcctttgaaatttcaattcaatac 26293647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 38682470 - 38682430
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  38682470 aaaaaagtcttttaaaatcctttgaaatctcaatacaatac 38682430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 10067725 - 10067764
Alignment:
Q  11 aaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  10067725 aaaaagtcttttaaaatcccttgaaatctcaattcaatac 10067764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 52024240 - 52024278
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaat 48  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  52024240 aaaaaagtcttttaaaatcctttgaaatctcaatccaat 52024278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 13662592 - 13662547
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| ||||||| ||||||||||||||| |||||| ||||    
T  13662592 aaaaaagtcttttaaaattctttgaaatctcaatccaatacacccc 13662547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 45926990 - 45927035
Alignment:
Q  11 aaaaagtctattaaaatcctttgaaatctcaattcaatacgcccct 56  Q
    ||||||||| |||||||||||| |||||||||| |||||| |||||    
T  45926990 aaaaagtcttttaaaatcctttaaaatctcaatccaatacacccct 45927035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 27593196 - 27593156
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||| ||| |||||||||||||||||||||||| |||||    
T  27593196 aaaaaaatcttttaaaatcctttgaaatctcaattgaatac 27593156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 35730976 - 35730936
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||| ||| ||||||||||||||||||||||| ||||||    
T  35730976 aaaaaaatcttttaaaatcctttgaaatctcaatccaatac 35730936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 50900487 - 50900527
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||| ||||||||||||||||||| ||| ||||||    
T  50900487 aaaaaagtcttttaaaatcctttgaaatcttaatccaatac 50900527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 44194146 - 44194300
Alignment:
Q  67 aaaatgacacaagtgttcaattttccagcgaaccccattgaagggaaatctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgct 166  Q
    ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||    
T  44194146 aaaatgacacaagagttcaattttctagcgaaccccattgaagagaaatctagattattggatcaccatttccaaagcatcaccatcgctatgatttgct 44194245  T
Q  167 aaaaatatgttaattaccctaaattagaatttcctttactataaaacaccccaac 221  Q
    |||||||||||||||| ||||||||||||||| | |||||||||||||| |||||    
T  44194246 aaaaatatgttaattatcctaaattagaattttcgttactataaaacactccaac 44194300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 44308091 - 44308245
Alignment:
Q  67 aaaatgacacaagtgttcaattttccagcgaaccccattgaagggaaatctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgct 166  Q
    |||||||||||||  |||||||| | || || |  ||||||||||||||||||||||||||||| || ||||||||||||||| || |||||||||||||    
T  44308091 aaaatgacacaagaattcaatttgcgagtgagcatcattgaagggaaatctagattattggatcgccgtttcccaagcatcaccattgctgtgatttgct 44308190  T
Q  167 aaaaatatgttaattaccctaaattagaatttcctttactataaaacaccccaac 221  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  44308191 aaaaatatgttaattaccttaaattagaatttccgttactataaaacaccccaac 44308245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 44315192 - 44315297
Alignment:
Q  118 agattattggatcaccatttcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaa--tttcctttactataaaacac 215  Q
    ||||||||||||| || | |||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||  ||||| ||||||||||| ||    
T  44315192 agattattggatcgccgtatcccaaacatcacaatcgctgtgatttactaaaaatacgttaattaccctaaattagaatttttccgttactataaaatac 44315291  T
Q  216 cccaac 221  Q
    | ||||    
T  44315292 ctcaac 44315297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 44300637 - 44300734
Alignment:
Q  120 attattggatcaccatttcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttcctttactataaaacacccca 219  Q
    ||||||||| || | ||||||||||||| |||||||||||||||  | ||| || ||||    |||||||||||||||||| |||||||||||||| |||    
T  44300637 attattggagcagcgtttcccaagcatcgcaatcgctgtgatttcttgaaagtacgtta----ccctaaattagaatttccgttactataaaacactcca 44300732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 10896846 - 10896796
Alignment:
Q  8 ataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccctaa 58  Q
    |||||||| ||| |||||||||||||||||||||||| ||||| |||||||    
T  10896846 ataaaaaaatcttttaaaatcctttgaaatctcaattgaatacacccctaa 10896796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 19007617 - 19007659
Alignment:
Q  8 ataaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  19007617 ataaaaaagtcttttaaaatcccttgaaatctcaattcaatac 19007659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 26882866 - 26882911
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||||    
T  26882866 aaaaaagtcttttaaaatcctttgaaatctcaatccaatacacccc 26882911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 36402291 - 36402246
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||||    
T  36402291 aaaaaagtcttttaaaatcctttgaaatctcaattgaatacacccc 36402246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 45318504 - 45318459
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||||    
T  45318504 aaaaaagtcttttaaaatcctttgaaatctcaatccaatacacccc 45318459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 1928444 - 1928492
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccctaa 58  Q
    |||||||||| |||||||||||| ||||||||||| ||||| |||||||    
T  1928444 aaaaaagtcttttaaaatcctttaaaatctcaattgaatacacccctaa 1928492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 9831343 - 9831303
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  9831343 aaaaaagtcttttaaaatcctttgaaatctcaattgaatac 9831303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 29208799 - 29208759
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  29208799 aaaaaagtcttttaaaatcctttgaaatctcaattgaatac 29208759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 39758024 - 39757985
Alignment:
Q  11 aaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  39758024 aaaaagtatatcaaaatcctttgaaatctcaattcaatac 39757985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 39763378 - 39763339
Alignment:
Q  11 aaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  39763378 aaaaagtatatcaaaatcctttgaaatctcaattcaatac 39763339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 48194635 - 48194589
Alignment:
Q  9 taaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    ||||||||||| ||||||||| |||||||| ||||||||||| ||||    
T  48194635 taaaaaagtcttttaaaatcccttgaaatcccaattcaatacacccc 48194589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 48203393 - 48203347
Alignment:
Q  9 taaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    ||||||||||| ||||||||| |||||||| ||||||||||| ||||    
T  48203393 taaaaaagtcttttaaaatcccttgaaatcccaattcaatacacccc 48203347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 34772356 - 34772315
Alignment:
Q  9 taaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    ||||||||||| |||||||||||||||||| |||| ||||||    
T  34772356 taaaaaagtcttttaaaatcctttgaaatcacaatccaatac 34772315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12253422 - 12253476
Alignment:
Q  1 tcttttcataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12253422 tcttttcataaaaaagtctattaaaatcctttgaaatctcaattcaatacacccc 12253476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 33474567 - 33474517
Alignment:
Q  5 ttcataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  33474567 ttcataaaaaaatctattaaaatcctttgaaatctcaattcaatacacccc 33474517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 151902 - 151857
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||||    
T  151902 aaaaaagtcttttaaaatcctttgaaatctcaatccaatacacccc 151857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 40097138 - 40097093
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||||    
T  40097138 aaaaaagtcttttaaaatcctttgaaatctcaattgaatacacccc 40097093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 27418682 - 27418715
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaat 43  Q
    |||||||||| |||||||||||||||||||||||    
T  27418682 aaaaaagtcttttaaaatcctttgaaatctcaat 27418715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 43057721 - 43057754
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaat 43  Q
    |||||||||| |||||||||||||||||||||||    
T  43057721 aaaaaagtcttttaaaatcctttgaaatctcaat 43057754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 47915097 - 47915142
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| |||||||||| |||||||||||| |||||| ||||    
T  47915097 aaaaaagtcttttaaaatcctatgaaatctcaatccaatacacccc 47915142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 30110847 - 30110807
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||| ||||||| ||||||||||||||| ||||||    
T  30110847 aaaaaagtcttttaaaattctttgaaatctcaatccaatac 30110807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 39301286 - 39301326
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||| |||||||| ||||||||||||||| |||||    
T  39301286 aaaaaagtcttttaaaatcttttgaaatctcaattgaatac 39301326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 56397496 - 56397442
Alignment:
Q  1 tcttttcataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  56397496 tcttttcataaaaaagtctattaaaatcctttgaaatctcaattcaatacacccc 56397442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 8584043 - 8584091
Alignment:
Q  8 ataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccct 56  Q
    |||||||||||| ||||||||||||||||||||||| |||||| |||||    
T  8584043 ataaaaaagtcttttaaaatcctttgaaatctcaatccaatacacccct 8584091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 54509758 - 54509712
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccct 56  Q
    |||||||||| |||||||||||||||||||||||| ||||| |||||    
T  54509758 aaaaaagtcttttaaaatcctttgaaatctcaattgaatacacccct 54509712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 25935830 - 25935785
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||||    
T  25935830 aaaaaagtcttttaaaatcctttgaaatctcaatccaatacacccc 25935785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 35261659 - 35261614
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||||    
T  35261659 aaaaaagtcttttaaaatcctttgaaatctcaatccaatacacccc 35261614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 26336121 - 26336081
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  26336121 aaaaaagtcttttaaaatcctttgaaatctcaattgaatac 26336081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 28847140 - 28847182
Alignment:
Q  8 ataaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||||| |||||||||||| |||||||||| ||||||    
T  28847140 ataaaaaagtcttttaaaatcctttaaaatctcaatccaatac 28847182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 38230817 - 38230771
Alignment:
Q  9 taaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    ||||||||||| ||||||||| |||||||| ||||||||||| ||||    
T  38230817 taaaaaagtcttttaaaatcccttgaaatcccaattcaatacacccc 38230771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 40143820 - 40143775
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| |||||||| ||||||||||||||| ||||| ||||    
T  40143820 aaaaaagtcttttaaaatcttttgaaatctcaattgaatacacccc 40143775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 41762020 - 41761975
Alignment:
Q  13 aaagtctattaaaatcctttgaaatctcaattcaatacgcccctaa 58  Q
    ||||||| |||||||||||| |||||||||| |||||| |||||||    
T  41762020 aaagtcttttaaaatcctttaaaatctcaatccaatacacccctaa 41761975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 42218444 - 42218489
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||| | ||||||||||||||||||||||| |||||| ||||    
T  42218444 aaaaaagttttttaaaatcctttgaaatctcaatccaatacacccc 42218489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 45332710 - 45332665
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| ||||||| |||||||||||||||| ||||| ||||    
T  45332710 aaaaaagtcttttaaaattctttgaaatctcaattgaatacacccc 45332665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 33450178 - 33450222
Alignment:
Q  11 aaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    ||||||||| ||||||||| ||||||||||||| |||||| ||||    
T  33450178 aaaaagtcttttaaaatccattgaaatctcaatccaatacacccc 33450222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 47685188 - 47685148
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||| |||||||| ||||||||||||||| |||||    
T  47685188 aaaaaagtcttttaaaatcttttgaaatctcaattgaatac 47685148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 21736636 - 21736690
Alignment:
Q  1 tcttttcataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21736636 tcttttcataaaaaagtctattaaaatcctttgaaatctcaattcaatacacccc 21736690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 7488160 - 7488215
Alignment:
Q  1 tcttttcataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccct 56  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||| |||||    
T  7488160 tcttttcataaaaaagtctattaaaattatttgaaatctcaattcaatacacccct 7488215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35172670 - 35172704
Alignment:
Q  1 tcttttcataaaaaagtctattaaaatcctttgaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  35172670 tcttttcataaaaaagtctattaaaatcctttgaa 35172704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 11534879 - 11534834
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||||    
T  11534879 aaaaaagtcttttaaaatcctttgaaatctcaattgaatacacccc 11534834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 20157797 - 20157842
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||||    
T  20157797 aaaaaagtcttttaaaatcctttgaaatctcaattgaatacacccc 20157842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 29940989 - 29940949
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  29940989 aaaaaagtcttttaaaatcctttgaaatctcaatccaatac 29940949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 2288507 - 2288460
Alignment:
Q  8 ataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||||| ||||||||| ||||| |||||||||||||| ||||    
T  2288507 ataaaaaagtcttttaaaatcccttgaattctcaattcaatacacccc 2288460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 11998457 - 11998496
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaata 49  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  11998457 aaaaaagtcttttaaaatcctttgaaatctcaattgaata 11998496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 6289539 - 6289584
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||| | ||||||||||||||||||||||| |||||| ||||    
T  6289539 aaaaaagttttttaaaatcctttgaaatctcaatccaatacacccc 6289584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 14920617 - 14920666
Alignment:
Q  6 tcataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||||||| |||||||||||| ||||| |||| |||||| ||||    
T  14920617 tcataaaaaagtcttttaaaatcctttaaaatcacaatccaatacacccc 14920666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 2373013 - 2372973
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||| ||||||||||| |||||| |||||||||||    
T  2373013 aaaaaagtcttttaaaatccttcgaaatcccaattcaatac 2372973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 21987339 - 21987295
Alignment:
Q  6 tcataaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||||||| |||||||||||| |||| |||||| |||||    
T  21987339 tcataaaaaagtcttttaaaatccttttaaatttcaattgaatac 21987295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 25343264 - 25343224
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||| |||||||||||| ||||||||||| |||||    
T  25343264 aaaaaagtcttttaaaatcctttaaaatctcaattgaatac 25343224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 44914631 - 44914583
Alignment:
Q  8 ataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccct 56  Q
    |||||||||||| ||||||||| ||||| ||||||||| |||| |||||    
T  44914631 ataaaaaagtcttttaaaatccattgaattctcaattccatacacccct 44914583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 43488959 - 43488905
Alignment:
Q  1 tcttttcataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  43488959 tcttttcataaaaaagtctattaaaatcctttgaaatttcaattcaatacacccc 43488905  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 43605404 - 43605452
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccctaa 58  Q
    |||||||||| ||||||||||||||||||||||| |||||| |||||||    
T  43605404 aaaaaagtcttttaaaatcctttgaaatctcaatccaatacccccctaa 43605452  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 9209080 - 9209034
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccct 56  Q
    |||||||||| ||||||| |||||||||||||||||||||| |||||    
T  9209080 aaaaaagtcttttaaaattctttgaaatctcaattcaatacacccct 9209034  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 1606053 - 1606098
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||||    
T  1606053 aaaaaagtcttttaaaatcctttgaaatctcaatccaatacacccc 1606098  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 30382714 - 30382759
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||||    
T  30382714 aaaaaagtcttttaaaatcctttgaaatctcaattgaatacacccc 30382759  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 2112835 - 2112795
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  2112835 aaaaaagtcttttaaaatcctttgaaatctcaatccaatac 2112795  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 7148090 - 7148050
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  7148090 aaaaaagtcttttaaaatcctttgaaatctcaatccaatac 7148050  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 28619887 - 28619847
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatac 50  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  28619887 aaaaaagtcttttaaaatcctttgaaatctcaatccaatac 28619847  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 10802809 - 10802856
Alignment:
Q  8 ataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||||| |||||||  ||||||||||||||||||||| ||||    
T  10802809 ataaaaaagtcttttaaaattatttgaaatctcaattcaatacacccc 10802856  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 29260316 - 29260361
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| |||||||||||| |||||||||| |||||| ||||    
T  29260316 aaaaaagtcttttaaaatcctttaaaatctcaatccaatacacccc 29260361  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 40265321 - 40265366
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| ||||||||||||||||| ||||| |||||| ||||    
T  40265321 aaaaaagtcttttaaaatcctttgaaatttcaatccaatacacccc 40265366  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 42275016 - 42274971
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||| ||| ||||||||||||||||||||||| |||||| ||||    
T  42275016 aaaaaaatcttttaaaatcctttgaaatctcaatccaatacacccc 42274971  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 40013510 - 40013558
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccctaa 58  Q
    |||||||||| ||||||| |||||||||||| || |||||| |||||||    
T  40013510 aaaaaagtcttttaaaattctttgaaatctccatccaatacacccctaa 40013558  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3604484 - 3604539
Alignment:
Q  1 tcttttcataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccct 56  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||    
T  3604484 tcttttcataagaaagtctattaaaatcatttgaaatctcaattcaatacacccct 3604539  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 6828832 - 6828877
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||||    
T  6828832 aaaaaagtcttttaaaatcctttgaaatctcaattgaatacacccc 6828877  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 40410634 - 40410589
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| ||||||||| ||||||||||||| |||||| ||||    
T  40410634 aaaaaagtcttttaaaatccattgaaatctcaatccaatacacccc 40410589  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 30877896 - 30877851
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||||    
T  30877896 aaaaaagtcttttaaaatcctttgaaatctcaattgaatacacccc 30877851  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 5957172 - 5957125
Alignment:
Q  8 ataaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||||| ||||||||| ||||| |||||||||||||| ||||    
T  5957172 ataaaaaagtcttttaaaatcccttgaattctcaattcaatacacccc 5957125  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 7100209 - 7100163
Alignment:
Q  9 taaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    ||||||||||| ||||||||| |||||||| ||||||||||| ||||    
T  7100209 taaaaaagtcttttaaaatcccttgaaatcccaattcaatacacccc 7100163  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 8794421 - 8794467
Alignment:
Q  9 taaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    ||||||||||| ||||||||| |||||||| ||||||||||| ||||    
T  8794421 taaaaaagtcttttaaaatcccttgaaatcccaattcaatacacccc 8794467  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 10644054 - 10644102
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccctaa 58  Q
    |||||||||| |||||||  ||||||||||||||| ||||| |||||||    
T  10644054 aaaaaagtcttttaaaatattttgaaatctcaattgaatacacccctaa 10644102  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 81822 - 81867
Alignment:
Q  10 aaaaaagtctattaaaatcctttgaaatctcaattcaatacgcccc 55  Q
    |||||||||| |||||||||||| |||||||||| |||||| ||||    
T  81822 aaaaaagtcttttaaaatcctttaaaatctcaatccaatacacccc 81867  T

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