View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_10 (Length: 559)
Name: NF18406_low_10
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 323 - 547
Target Start/End: Original strand, 40089048 - 40089272
Alignment:
| Q |
323 |
aatcatgatcctcctagaatagccctcgtttccttataagttttgaagattgtaccaaccataaccaccaaaaacatgtgtctttcgggcgtaataatat |
422 |
Q |
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| T |
40089048 |
aatcatgatcctcctagaatagccctcgtttccttataagttttgaagattgtaccaaccataaccaccaaaaacatgtgtctttcgggcgtaataatat |
40089147 |
T |
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| Q |
423 |
cttcaatttatggagtttaaggtgaggctggtgtggtgaatgttgattgcactatttatctctagtgtttcgcatgcgtattaatgtaacatccttgtgt |
522 |
Q |
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| T |
40089148 |
cttcaatttatggagtttaaggtgaggctggtgtggtgaatgttgattgcactatttatctcaagtgtttcgcatgcgtattaatgtaacatccttgtgt |
40089247 |
T |
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| Q |
523 |
tgtctttttcgtcctgcctttgcta |
547 |
Q |
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| T |
40089248 |
tgtctttttcgtcctgcctttgcta |
40089272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 324
Target Start/End: Original strand, 40088711 - 40089018
Alignment:
| Q |
20 |
tatattagaagtgtttattcataataaatgtttttt---aagttatttctatataacagnnnnnnnnnnnnnnnnnttgttttcttctaagttataagtt |
116 |
Q |
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| T |
40088711 |
tatattagaagtgtttattcatgataaatatttttttttaagttatttctatataacagaaaataaaaataaaaaattgttttcttctaaattataagct |
40088810 |
T |
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| Q |
117 |
gtttgtttaagcaataaatcttgcataacttatgaaaatatactaaaaacattgacgaaaattggtttagtttataagtaattgagtcatattctacaaa |
216 |
Q |
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| T |
40088811 |
gtttgtttaagcaataagtctcgcagagcttatgaaaatatactaaaaacattgacgaaaattggtttagtttataactagttgagtcatattctacaaa |
40088910 |
T |
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| Q |
217 |
aatataatatattcaactttcgttactagcgcgatgatctatttaatagatcattttgtaagtaactttattaatgctctatgagcctttgagttggacc |
316 |
Q |
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| T |
40088911 |
aatataatatgttcaacttttgttactagcgcgatgatctatttaatagatcattttgtaagtaactttattaatgctctatgagcctttgagttggacc |
40089010 |
T |
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| Q |
317 |
ttaaagaa |
324 |
Q |
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|||||||| |
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| T |
40089011 |
ttaaagaa |
40089018 |
T |
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