View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18406_low_100 (Length: 234)

Name: NF18406_low_100
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18406_low_100
NF18406_low_100
[»] chr2 (31 HSPs)
chr2 (27-234)||(22857882-22858088)
chr2 (162-234)||(42263548-42263620)
chr2 (162-234)||(18452567-18452639)
chr2 (162-234)||(6761463-6761535)
chr2 (162-234)||(29866080-29866152)
chr2 (162-234)||(30864753-30864825)
chr2 (163-234)||(16241345-16241416)
chr2 (163-234)||(25892022-25892093)
chr2 (160-234)||(39377832-39377906)
chr2 (163-233)||(44737361-44737431)
chr2 (162-234)||(2100015-2100087)
chr2 (166-234)||(32197378-32197446)
chr2 (162-234)||(43658003-43658075)
chr2 (183-234)||(27182094-27182145)
chr2 (183-234)||(27831636-27831687)
chr2 (163-234)||(41260024-41260095)
chr2 (160-234)||(13775707-13775781)
chr2 (163-229)||(45065663-45065729)
chr2 (162-230)||(11711406-11711474)
chr2 (161-229)||(25795321-25795389)
chr2 (162-234)||(40430744-40430816)
chr2 (183-234)||(11363076-11363127)
chr2 (163-230)||(20427000-20427067)
chr2 (188-227)||(39792176-39792215)
chr2 (161-227)||(6761550-6761616)
chr2 (162-232)||(12486072-12486142)
chr2 (183-232)||(3037805-3037854)
chr2 (163-220)||(27311669-27311726)
chr2 (199-232)||(27596729-27596762)
chr2 (163-227)||(16241266-16241330)
chr2 (183-227)||(22857823-22857867)
[»] scaffold0002 (1 HSPs)
scaffold0002 (162-234)||(492383-492455)
[»] scaffold0221 (1 HSPs)
scaffold0221 (162-234)||(11028-11100)
[»] chr4 (43 HSPs)
chr4 (162-234)||(38687989-38688061)
chr4 (163-234)||(3085950-3086021)
chr4 (160-234)||(31227267-31227341)
chr4 (161-234)||(53621406-53621479)
chr4 (162-234)||(580489-580561)
chr4 (162-234)||(2411918-2411990)
chr4 (162-234)||(19485570-19485642)
chr4 (162-234)||(23125644-23125716)
chr4 (162-234)||(51833010-51833082)
chr4 (163-230)||(27006504-27006571)
chr4 (163-234)||(39877402-39877473)
chr4 (159-234)||(47948934-47949009)
chr4 (165-234)||(31854457-31854526)
chr4 (161-234)||(36099484-36099557)
chr4 (162-234)||(4698621-4698693)
chr4 (162-234)||(21229223-21229295)
chr4 (162-234)||(53303734-53303806)
chr4 (163-230)||(18135395-18135462)
chr4 (163-234)||(44200050-44200121)
chr4 (163-234)||(49122598-49122669)
chr4 (183-230)||(55292194-55292241)
chr4 (162-227)||(36099572-36099637)
chr4 (174-234)||(2279534-2279594)
chr4 (162-234)||(2385273-2385345)
chr4 (162-230)||(4758859-4758927)
chr4 (162-234)||(5970357-5970429)
chr4 (159-227)||(19485657-19485725)
chr4 (162-234)||(21221116-21221187)
chr4 (165-232)||(4698703-4698770)
chr4 (183-234)||(6246627-6246678)
chr4 (183-234)||(7350284-7350335)
chr4 (183-230)||(15170965-15171012)
chr4 (163-234)||(39834273-39834344)
chr4 (183-234)||(56216253-56216304)
chr4 (177-227)||(14785101-14785151)
chr4 (161-227)||(53621325-53621391)
chr4 (162-227)||(4758775-4758840)
chr4 (201-234)||(20114096-20114129)
chr4 (169-234)||(35328944-35329009)
chr4 (174-230)||(18430337-18430393)
chr4 (163-227)||(39732000-39732064)
chr4 (160-232)||(53225724-53225796)
chr4 (185-233)||(54611995-54612043)
[»] scaffold0123 (1 HSPs)
scaffold0123 (163-234)||(29243-29314)
[»] chr5 (29 HSPs)
chr5 (163-234)||(31803036-31803107)
chr5 (161-234)||(25027691-25027764)
chr5 (162-234)||(6338393-6338465)
chr5 (162-234)||(7945835-7945907)
chr5 (163-234)||(7749917-7749988)
chr5 (159-234)||(15569409-15569484)
chr5 (163-234)||(18353286-18353357)
chr5 (160-234)||(21610379-21610453)
chr5 (162-234)||(904044-904116)
chr5 (174-234)||(37699858-37699918)
chr5 (162-234)||(41989562-41989634)
chr5 (183-230)||(6910731-6910778)
chr5 (163-230)||(7053647-7053714)
chr5 (163-234)||(9601671-9601742)
chr5 (163-234)||(13144879-13144950)
chr5 (163-234)||(26898190-26898261)
chr5 (183-234)||(29374189-29374240)
chr5 (183-234)||(42311888-42311939)
chr5 (162-227)||(13144965-13145030)
chr5 (156-233)||(41815177-41815254)
chr5 (162-230)||(2959321-2959389)
chr5 (162-230)||(2967790-2967858)
chr5 (163-231)||(36417128-36417196)
chr5 (166-234)||(41046830-41046898)
chr5 (161-234)||(23411162-23411235)
chr5 (162-227)||(29374255-29374320)
chr5 (162-230)||(1643342-1643410)
chr5 (198-234)||(2825894-2825930)
chr5 (163-227)||(37699779-37699843)
[»] chr3 (37 HSPs)
chr3 (159-234)||(14768093-14768168)
chr3 (160-234)||(3484328-3484402)
chr3 (161-234)||(23825146-23825219)
chr3 (162-234)||(8243760-8243832)
chr3 (162-234)||(10049666-10049738)
chr3 (162-234)||(28945654-28945726)
chr3 (162-234)||(40141952-40142024)
chr3 (163-234)||(379069-379140)
chr3 (163-234)||(9440206-9440277)
chr3 (163-234)||(19202328-19202399)
chr3 (168-234)||(6086979-6087045)
chr3 (165-234)||(49122945-49123014)
chr3 (162-234)||(18765336-18765408)
chr3 (162-234)||(28565013-28565085)
chr3 (163-234)||(26999020-26999091)
chr3 (163-234)||(29019734-29019805)
chr3 (163-234)||(47449915-47449986)
chr3 (162-232)||(48593222-48593292)
chr3 (163-229)||(48643687-48643753)
chr3 (160-234)||(51698192-51698266)
chr3 (168-234)||(52114102-52114168)
chr3 (169-234)||(335453-335518)
chr3 (165-234)||(25113427-25113496)
chr3 (162-227)||(42605825-42605890)
chr3 (170-234)||(21653422-21653486)
chr3 (163-230)||(9465153-9465220)
chr3 (160-227)||(10049753-10049820)
chr3 (161-227)||(6086898-6086964)
chr3 (160-234)||(25846589-25846663)
chr3 (162-232)||(28406465-28406535)
chr3 (162-227)||(26999106-26999171)
chr3 (161-226)||(28406553-28406618)
chr3 (161-230)||(40214982-40215051)
chr3 (163-227)||(42225561-42225625)
chr3 (162-234)||(42605905-42605977)
chr3 (194-234)||(44593279-44593319)
chr3 (186-230)||(55139195-55139239)
[»] chr8 (23 HSPs)
chr8 (161-234)||(2339287-2339360)
chr8 (162-234)||(22781880-22781952)
chr8 (163-234)||(29916526-29916598)
chr8 (163-234)||(2229148-2229219)
chr8 (163-234)||(29563657-29563728)
chr8 (163-234)||(34028382-34028453)
chr8 (161-234)||(41915591-41915664)
chr8 (166-234)||(12270134-12270202)
chr8 (183-234)||(7668210-7668261)
chr8 (163-234)||(33642457-33642528)
chr8 (163-234)||(45145868-45145939)
chr8 (159-229)||(5311405-5311474)
chr8 (164-234)||(32159112-32159182)
chr8 (162-227)||(2229068-2229133)
chr8 (162-234)||(34157658-34157731)
chr8 (194-234)||(43135074-43135114)
chr8 (183-234)||(25847986-25848037)
chr8 (183-233)||(41569175-41569225)
chr8 (161-234)||(30923999-30924072)
chr8 (174-234)||(37564709-37564769)
chr8 (194-234)||(40465316-40465356)
chr8 (198-234)||(40834170-40834206)
chr8 (174-230)||(42351280-42351336)
[»] chr6 (21 HSPs)
chr6 (162-234)||(24949709-24949781)
chr6 (163-234)||(390883-390954)
chr6 (163-234)||(766505-766576)
chr6 (170-234)||(6801629-6801693)
chr6 (162-234)||(7405442-7405514)
chr6 (162-234)||(22898851-22898923)
chr6 (163-234)||(30686543-30686614)
chr6 (162-230)||(6045763-6045831)
chr6 (162-234)||(22880916-22880988)
chr6 (162-234)||(33859488-33859560)
chr6 (183-234)||(8558992-8559042)
chr6 (163-234)||(17225321-17225392)
chr6 (163-234)||(31971108-31971179)
chr6 (161-227)||(885599-885665)
chr6 (29-75)||(14557964-14558010)
chr6 (162-227)||(8558912-8558977)
chr6 (185-234)||(14931279-14931328)
chr6 (185-234)||(34639118-34639167)
chr6 (194-234)||(885680-885720)
chr6 (162-230)||(6047878-6047946)
chr6 (159-227)||(14931338-14931406)
[»] chr1 (25 HSPs)
chr1 (162-234)||(14281588-14281660)
chr1 (162-234)||(34718889-34718961)
chr1 (162-234)||(38830481-38830553)
chr1 (163-234)||(28989271-28989342)
chr1 (162-234)||(1674050-1674122)
chr1 (162-234)||(2961182-2961254)
chr1 (162-230)||(9548670-9548738)
chr1 (162-234)||(10380468-10380540)
chr1 (162-234)||(23398078-23398150)
chr1 (174-234)||(28359149-28359209)
chr1 (159-234)||(33325328-33325403)
chr1 (162-234)||(2352307-2352379)
chr1 (159-227)||(2352394-2352462)
chr1 (194-234)||(7796168-7796208)
chr1 (162-234)||(9301997-9302069)
chr1 (162-234)||(23537399-23537471)
chr1 (162-234)||(26733783-26733855)
chr1 (163-230)||(29312438-29312505)
chr1 (183-234)||(40161251-40161302)
chr1 (161-227)||(10065252-10065318)
chr1 (13-75)||(34228876-34228938)
chr1 (13-75)||(37046987-37047049)
chr1 (165-234)||(45536241-45536310)
chr1 (161-234)||(46320227-46320300)
chr1 (162-230)||(10065337-10065405)
[»] chr7 (17 HSPs)
chr7 (163-234)||(35427737-35427808)
chr7 (161-234)||(34281747-34281820)
chr7 (162-234)||(5909549-5909621)
chr7 (162-234)||(10599394-10599466)
chr7 (174-230)||(12085106-12085162)
chr7 (162-234)||(12763227-12763299)
chr7 (163-234)||(7463448-7463519)
chr7 (163-234)||(23248746-23248817)
chr7 (162-234)||(7107628-7107700)
chr7 (162-234)||(19979572-19979644)
chr7 (183-234)||(3411351-3411402)
chr7 (163-234)||(5347801-5347871)
chr7 (163-234)||(20397814-20397885)
chr7 (159-229)||(23248663-23248733)
chr7 (185-234)||(30866266-30866315)
chr7 (162-234)||(12426608-12426680)
chr7 (194-234)||(29770352-29770392)
[»] scaffold0024 (1 HSPs)
scaffold0024 (162-234)||(35952-36024)
[»] scaffold2107 (1 HSPs)
scaffold2107 (174-234)||(453-513)
[»] scaffold0144 (1 HSPs)
scaffold0144 (183-234)||(38844-38895)
[»] scaffold0067 (1 HSPs)
scaffold0067 (160-234)||(5212-5286)
[»] scaffold0005 (1 HSPs)
scaffold0005 (177-227)||(54579-54629)
[»] scaffold0246 (1 HSPs)
scaffold0246 (169-234)||(15160-15225)
[»] scaffold0007 (1 HSPs)
scaffold0007 (162-234)||(77423-77494)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 27 - 234
Target Start/End: Complemental strand, 22858088 - 22857882
Alignment:
Q  27 accacacttcgaggtcccaatctaacaccaccggaccaacccaagtgggatgtccaaccttttaccagctgaactatacttataagatcatgtgacttta 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22858088 accacacttcgaggtcccaatctaacaccaccggaccaacccaagtgggttttccaaccttttaccagctgaactatacttataagatcatgtgacttta 22857989  T
Q  127 gttttatttgtattgaaatttaacaatgttactttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgta 226  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  22857988 gttttattggtattgaaatttaacaatgttactttatactccctccggtccttttcacaggaaacactttat-ttttagatacaatgaataatttatgta 22857890  T
Q  227 tttggttt 234  Q
    ||||||||    
T  22857889 tttggttt 22857882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 42263620 - 42263548
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||||||||| || |||||||||| |||| |||||||||||| | |||||||||||||||||||||    
T  42263620 atactccctccagtcctatttacaagaaacaatttactttttagatacattaaataatttatgtatttggttt 42263548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 18452567 - 18452639
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| ||||||||||| || |||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  18452567 atactacctccagtcctatttacaagagacaatttactttttagatacattgaataatttatgtatttggttt 18452639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 6761463 - 6761535
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| ||||| ||||| || |||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  6761463 atactacctccggtcctatttacaagagacaatttactttttagatacattgaataatttatgtatttggttt 6761535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 29866080 - 29866152
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  29866080 atactccctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 29866152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 30864825 - 30864753
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||||||| | || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  30864825 atactccctccagtcttatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 30864753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 16241416 - 16241345
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| ||||| ||||| || |||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  16241416 tactacctccggtcctatttacaagagacaatttactttttagatacattgaataatttatgtatttggttt 16241345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 25892093 - 25892022
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| ||||| ||||| || |||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  25892093 tactacctccggtcctatttacaagagacaatttactttttagatacattgaataatttatgtatttggttt 25892022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 39377832 - 39377906
Alignment:
Q  160 ttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||||| ||||| || |||||| ||| |||| ||||||||||||   |||||||||||||||||||||    
T  39377832 ttatactccctccggtcctatttacaagagacaatttactttttagatacatcaaataatttatgtatttggttt 39377906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 44737431 - 44737361
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggtt 233  Q
    |||| ||||| ||||| || |||||| ||| |||| |||||||||||| ||||||||||||||||||||||    
T  44737431 tactacctccggtcctatttacaagagacaatttactttttagatacattgaataatttatgtatttggtt 44737361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 2100015 - 2100087
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| |||||| ||||| || |||||| |||  |||||||||||||||| | |||||||||||||||||||||    
T  2100015 ataccccctccggtcctatttacaagagacatgttattttttagatacattaaataatttatgtatttggttt 2100087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 32197378 - 32197446
Alignment:
Q  166 tccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||  |||| || ||| |||||| ||||||||||||||||| | |||||||||||||||||||||    
T  32197378 tccctccgatcctatttacatgaaacaatttattttttagatacattaaataatttatgtatttggttt 32197446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 43658075 - 43658003
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||| ||||||| || |||||| | | |||| |||||||||||| | |||||||||||||||||||||    
T  43658075 atactcccttcagtcctatttacaagagataatttactttttagatacattaaataatttatgtatttggttt 43658003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 27182094 - 27182145
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| || |||||| ||||||| |||||||||||||||||||||||    
T  27182094 acaagaaacaattgatttttcagatacattgaataatttatgtatttggttt 27182145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 27831636 - 27831687
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| || |||||| ||||||| |||||||||||||||||||||||    
T  27831636 acaagaaacaattgatttttcagatacattgaataatttatgtatttggttt 27831687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 41260024 - 41260095
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||||| ||| |||| ||||| |||||| | |||||||||||||||||||||    
T  41260024 tactccctccggtcctatttacaagagacaatttacttttttgatacattaaataatttatgtatttggttt 41260095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 13775707 - 13775781
Alignment:
Q  160 ttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||||| ||||| || |||||| | | |||| |||||||||| | | |||||||||||||||||||||    
T  13775707 ttatactccctccggtcctatttacaagagataatttactttttagatatattaaataatttatgtatttggttt 13775781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 45065729 - 45065663
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtattt 229  Q
    ||||||||||||| || || |||||| ||| |||| |||||||||||| | ||||||||||||||||    
T  45065729 tactccctccagttctatttacaagagacaatttactttttagatacattaaataatttatgtattt 45065663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 11711474 - 11711406
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    ||||||||||| ||||| || |||||| ||| |||| |||| ||||||| | |||||||||||||||||    
T  11711474 atactccctccggtcctatttacaagagacaatttacttttaagatacattaaataatttatgtatttg 11711406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 25795389 - 25795321
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtattt 229  Q
    |||||||||||| |||||| | |||||||||| || | ||||||||| || ||||||||| ||||||||    
T  25795389 tatactccctccggtccttattacaagaaacaattgactttttagattcattgaataattaatgtattt 25795321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 40430816 - 40430744
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| |||| ||||| || | |||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  40430816 atactctctccggtcctatttataagagacaatttactttttagatacattaaataatttatgtatttggttt 40430744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 11363127 - 11363076
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  11363127 acaagagacaatttactttttagatacattaaataatttatgtatttggttt 11363076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 20427000 - 20427067
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    |||||||||| ||||| || |||||| ||| |||| |||||||||| | | |||||||||||||||||    
T  20427000 tactccctccggtcctatttacaagagacaatttactttttagatagattaaataatttatgtatttg 20427067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 39792215 - 39792176
Alignment:
Q  188 aaacactttattttttagatacaatgaataatttatgtat 227  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  39792215 aaacacttcattttttagatacaatgaataattaatgtat 39792176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 6761616 - 6761550
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    |||||||||||| ||||| || |||||| ||| || | |||||||||||| |||||||| |||||||    
T  6761616 tatactccctccggtcctatttacaagagacagttgactttttagatacattgaataatgtatgtat 6761550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 12486142 - 12486072
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggt 232  Q
    ||||||||||  ||||| || |||||||||| || | ||||||||| || ||||||||| |||||||||||    
T  12486142 atactccctctggtcctatttacaagaaacaattgactttttagattcattgaataattgatgtatttggt 12486072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 3037854 - 3037805
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttggt 232  Q
    ||||||||||  | ||||||||||| || |||||||||||||||||||||    
T  3037854 acaagaaacaaatgattttttagattcattgaataatttatgtatttggt 3037805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 27311726 - 27311669
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatt 220  Q
    |||||||||| |||||| |||||||||||| || |||||||||||  | |||||||||    
T  27311726 tactccctccggtccttatcacaagaaacaattgattttttagatttattgaataatt 27311669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 27596762 - 27596729
Alignment:
Q  199 tttttagatacaatgaataatttatgtatttggt 232  Q
    |||||||||||| |||||||||||||||||||||    
T  27596762 tttttagatacattgaataatttatgtatttggt 27596729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 16241266 - 16241330
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    |||||||||| ||||| || |||||| ||| || | |||||||||||| |||||||| |||||||    
T  16241266 tactccctccggtcctatttacaagagacagttgactttttagatacattgaataatgtatgtat 16241330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 22857823 - 22857867
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    |||||||||| || | |||||||||||| ||||||||||||||||    
T  22857823 acaagaaacaattgactttttagatacattgaataatttatgtat 22857867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 492455 - 492383
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||||||||| || |||||||||| |||| |||||||||||| | |||||||||||||||||||||    
T  492455 atactccctccagtcctatttacaagaaacaatttactttttagatacattaaataatttatgtatttggttt 492383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 11028 - 11100
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||| |||||||| |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  11028 atactccctccggtcctttttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 11100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 38688061 - 38687989
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||| ||||| || |||||||||| |||| |||||||||||| | |||||||||||||||||||||    
T  38688061 atactccctccggtcctatttacaagaaacaatttactttttagatacattaaataatttatgtatttggttt 38687989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 3086021 - 3085950
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||||| ||| ||||||||||||||||| | |||||||||||||||||||||    
T  3086021 tactccctccggtcctatttacaagagacaatttattttttagatacattaaataatttatgtatttggttt 3085950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 31227267 - 31227341
Alignment:
Q  160 ttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||| ||| ||||| || |||||||||| |||| |||||||||||| | |||||||||||||||||||||    
T  31227267 ttatactccatccggtcctatttacaagaaacaatttactttttagatacattaaataatttatgtatttggttt 31227341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 53621479 - 53621406
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| ||||| ||||| || |||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  53621479 tatactacctccggtcctatttacaagagacaatttactttttagatacattgaataatttatgtatttggttt 53621406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 580561 - 580489
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| ||||| ||||| || |||||| ||| ||||||||||||||||| | |||||||||||||||||||||    
T  580561 atactacctccggtcctatttacaagagacaatttattttttagatacattaaataatttatgtatttggttt 580489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 2411990 - 2411918
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||| ||||||| || |||||||||| |||| |||||||||||| | |||||||||||||||| ||||    
T  2411990 atactcccttcagtcctatttacaagaaacaatttactttttagatacattaaataatttatgtatttagttt 2411918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 19485570 - 19485642
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||| ||||| || |||||||||| |||| |||||| ||||| | |||||||||||||||||||||    
T  19485570 atactccctcctgtcctatttacaagaaacaatttactttttaaatacattaaataatttatgtatttggttt 19485642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 23125644 - 23125716
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  23125644 atactccctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 23125716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 51833010 - 51833082
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||| ||| ||||| || |||||| ||| ||||||||||||||||| | |||||||||||||||||||||    
T  51833010 atactccatccggtcctatttacaagagacaatttattttttagatacattaaataatttatgtatttggttt 51833082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 27006504 - 27006571
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    |||||||||||||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||    
T  27006504 tactccctccagtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttg 27006571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 39877402 - 39877473
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||||||||  |||| |||||||||||| | |||||||||||||||||||||    
T  39877402 tactccctccggtcctatttacaagaaacgatttactttttagatacattaaataatttatgtatttggttt 39877473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 47948934 - 47949009
Alignment:
Q  159 tttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||| |||||||||||  | |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  47948934 tttatactacctccagtcctacttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 47949009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 31854526 - 31854457
Alignment:
Q  165 ctccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| ||| ||||| || |||||||||| |||| |||||||||||| | |||||||||||||||||||||    
T  31854526 ctccttccggtcctatttacaagaaacaatttactttttagatacattaaataatttatgtatttggttt 31854457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 36099484 - 36099557
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| ||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  36099484 tatactacctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 36099557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 4698621 - 4698693
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||   ||||||| |||||||||| || | |||||||||||| |||||||||||||||| ||||||    
T  4698621 atactccctctgatcctttttacaagaaacaattgaatttttagatacattgaataatttatgtatctggttt 4698693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 21229223 - 21229295
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||||||| | || |||||||||| |||||  |||| ||||| | |||||||||||||||||||||    
T  21229223 atactccctccagtcttatttacaagaaacaatttatcatttaaatacattaaataatttatgtatttggttt 21229295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 53303734 - 53303806
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||| ||| ||||| || |||||  ||| ||||||||||||||||| | |||||||||||||||||||||    
T  53303734 atactccatccggtcctatttacaagtgacaatttattttttagatacactaaataatttatgtatttggttt 53303806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 18135462 - 18135395
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    |||| ||||| ||||| || |||||| ||| |||| |||||||||||| |||||||||||||||||||    
T  18135462 tactacctccggtcctatttacaagagacaatttactttttagatacattgaataatttatgtatttg 18135395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 44200121 - 44200050
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||| | || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  44200121 tactccctccggtcttatttacaagagacaatttactttttagatacactaaataatttatgtatttggttt 44200050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 49122669 - 49122598
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| ||||| ||||| || |||||| ||| |||| |||||||||||| |||||||||||| ||||||||||    
T  49122669 tactacctccggtcctatttacaagagacaatttactttttagatacattgaataatttatatatttggttt 49122598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 55292241 - 55292194
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    |||||||||| ||||||||||||||||| | |||||||||||||||||    
T  55292241 acaagaaacaatttattttttagatacattaaataatttatgtatttg 55292194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 36099637 - 36099572
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    ||||||||||| ||||| || |||||| ||| || |||||||||||||| |||||||| |||||||    
T  36099637 atactccctccggtcctatttacaagagacagttgattttttagatacattgaataatgtatgtat 36099572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 2279534 - 2279594
Alignment:
Q  174 gtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  2279534 gtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 2279594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 2385345 - 2385273
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||  ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||| ||||    
T  2385345 atactccctctggtcctatttacaagagacaatttaatttttagatacattaaataatttatgtattttgttt 2385273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 4758927 - 4758859
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    ||||| ||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||    
T  4758927 atactacctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttg 4758859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 5970429 - 5970357
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||| ||| ||||| || |||||| ||| |||| |||||||| ||| | |||||||||||||||||||||    
T  5970429 atactccttccggtcctatttacaagagacaatttactttttagacacattaaataatttatgtatttggttt 5970357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 19485725 - 19485657
Alignment:
Q  159 tttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    |||||||||||||| ||||| || |||||| | | || |||||||||||||| |||||||| |||||||    
T  19485725 tttatactccctccggtcctatttacaagagaaaattgattttttagatacattgaataatgtatgtat 19485657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 21221116 - 21221187
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| |||| ||||| || |||| ||||| |||| |||||||||||| | |||||||||||||||||||||    
T  21221116 atactctctcctgtcctatttacaa-aaacaatttactttttagatacattaaataatttatgtatttggttt 21221187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 4698770 - 4698703
Alignment:
Q  165 ctccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggt 232  Q
    ||||||| | |||| || |||| ||||| || |||||||||||||| |||||||||||||||| ||||    
T  4698770 ctccctcaattcctatttacaataaacaattgattttttagatacattgaataatttatgtatatggt 4698703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 6246627 - 6246678
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  6246627 acaagagacaatttactttttagatacattaaataatttatgtatttggttt 6246678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 7350335 - 7350284
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  7350335 acaagagacaatttactttttagatacattaaataatttatgtatttggttt 7350284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 15171012 - 15170965
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    |||| ||||| |||| |||||||||||| |||||||||||||||||||    
T  15171012 acaaaaaacaatttactttttagatacattgaataatttatgtatttg 15170965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 39834273 - 39834344
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||| | || |||||| ||| ||||||||||||||||| | |||||||||| ||||| ||||    
T  39834273 tactccctccggtcttatttacaagagacaatttattttttagatacattaaataatttatatattttgttt 39834344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 56216253 - 56216304
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  56216253 acaagagacaatttactttttagatacattaaataatttatgtatttggttt 56216304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 14785151 - 14785101
Alignment:
Q  177 cttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    ||||| |||||||||| ||||||||||| ||||| ||||||| ||||||||    
T  14785151 ctttttacaagaaacaatttattttttaaatacattgaataaattatgtat 14785101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 53621325 - 53621391
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    |||||||||||| ||||| || |||||| ||| || | |||||||||||| |||||||| |||||||    
T  53621325 tatactccctccggtcctatttacaagagacagttgactttttagatacattgaataatgtatgtat 53621391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 4758775 - 4758840
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    ||||||||||| ||||| || |||||| ||| || | |||||||||||| |||||||| |||||||    
T  4758775 atactccctccggtcctatttacaagagacagttgactttttagatacattgaataatgtatgtat 4758840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 20114096 - 20114129
Alignment:
Q  201 tttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| |||||||||||||||||||||||    
T  20114096 tttagatacattgaataatttatgtatttggttt 20114129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 35328944 - 35329009
Alignment:
Q  169 ctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| ||||| || |||| ||| | |||| |||||||||||| | |||||||||||||||||||||    
T  35328944 ctccggtcctatttacaaaaaataatttactttttagatacattaaataatttatgtatttggttt 35329009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 18430393 - 18430337
Alignment:
Q  174 gtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||    
T  18430393 gtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttg 18430337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 39732000 - 39732064
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    ||||||||||| || | || |||||||||| || | |||||||| ||| ||||||||||||||||    
T  39732000 tactccctccaatcatgtttacaagaaacaattgactttttagacacattgaataatttatgtat 39732064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 53225796 - 53225724
Alignment:
Q  160 ttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggt 232  Q
    ||||||||||||| ||||| || | |||||| | || | ||||||||| || ||||||||| |||||||||||    
T  53225796 ttatactccctccggtcctatttataagaaaaaattgactttttagattcattgaataattaatgtatttggt 53225724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 54611995 - 54612043
Alignment:
Q  185 aagaaacactttattttttagatacaatgaataatttatgtatttggtt 233  Q
    |||| ||| |||| |||||||||||| | ||||||||||||||||||||    
T  54611995 aagacacaatttactttttagatacattaaataatttatgtatttggtt 54612043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 29243 - 29314
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||||||||| |||| |||||||||||| | |||||||||||||||||||||    
T  29243 tactccctccggtcctatttacaagaaacaatttactttttagatacattaaataatttatgtatttggttt 29314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 31803107 - 31803036
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||||||||| |||| |||||||||||| | |||||||||||||||||||||    
T  31803107 tactccctccggtcctatttacaagaaacaatttactttttagatacattaaataatttatgtatttggttt 31803036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 25027691 - 25027764
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| ||||| ||||| || |||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  25027691 tatactacctccggtcctatttacaagagacaatttactttttagatacattgaataatttatgtatttggttt 25027764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 6338465 - 6338393
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||||||||| || |||| | ||| |||| |||||||||||| | |||||||||||||||||||||    
T  6338465 atactccctccagtcctatttacaaaagacaatttactttttagatacattaaataatttatgtatttggttt 6338393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 7945835 - 7945907
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||| ||||| || |||||||||| |||| |||||||||||| | |||||||||| ||||||||||    
T  7945835 atactccctccggtcctatttacaagaaacaatttactttttagatacattaaataatttatatatttggttt 7945907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 7749917 - 7749988
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  7749917 tactccctccggtcctatttacaagagacaatttaatttttagatacattaaataatttatgtatttggttt 7749988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 15569484 - 15569409
Alignment:
Q  159 tttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||| ||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  15569484 tttatacttcctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 15569409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 18353357 - 18353286
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||  |||| || |||||||||| |||| |||||||||||| | |||||||||||||||||||||    
T  18353357 tactccctccgatcctatttacaagaaacaatttactttttagatacattaaataatttatgtatttggttt 18353286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 21610453 - 21610379
Alignment:
Q  160 ttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||||| ||||| || |||||||||| || | |||||| ||||| | |||||||||||||||||||||    
T  21610453 ttatactccctccggtcctatttacaagaaacaattaactttttatatacattaaataatttatgtatttggttt 21610379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 904116 - 904044
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||| || || || |||| ||||| |||| |||||||||||| | |||||||||||||||||||||    
T  904116 atactccctccggttctatttacaataaacaatttactttttagatacattaaataatttatgtatttggttt 904044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 37699918 - 37699858
Alignment:
Q  174 gtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| || |||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  37699918 gtcctatttacaagagacaatttactttttagatacattgaataatttatgtatttggttt 37699858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 41989562 - 41989634
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| ||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  41989562 atacttcctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 41989634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 6910731 - 6910778
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    |||||||||| ||||||||||||||||| | |||||||||||||||||    
T  6910731 acaagaaacaatttattttttagatacattaaataatttatgtatttg 6910778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 7053647 - 7053714
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    |||||||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||    
T  7053647 tactccctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttg 7053714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 9601742 - 9601671
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||||| ||| |||| ||||||||||||   |||||||||||||||||||||    
T  9601742 tactccctccggtcctatttacaagagacaatttactttttagatacatcaaataatttatgtatttggttt 9601671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 13144879 - 13144950
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| ||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  13144879 tactacctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 13144950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 26898190 - 26898261
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||| ||||||| || |||||| ||| |||| |||||| ||||| | |||||||||||||||||||||    
T  26898190 tactcccttcagtcctatttacaagagacaatttactttttaaatacattaaataatttatgtatttggttt 26898261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 29374189 - 29374240
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  29374189 acaagagacaatttactttttagatacattgaataatttatgtatttggttt 29374240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 42311939 - 42311888
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| ||| ||||||||||||||||| | |||||||||||||||||||||    
T  42311939 acaagagacaatttattttttagatacattaaataatttatgtatttggttt 42311888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 13145030 - 13144965
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    ||||||||||| ||||| || |||||| ||| || |||||||||||||| |||||||| |||||||    
T  13145030 atactccctccggtcctatttacaagagacagttgattttttagatacattgaataatgtatgtat 13144965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 41815177 - 41815254
Alignment:
Q  156 tactttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggtt 233  Q
    ||||||||||||| |||  |||| || |||| ||||| |||| |||||| ||||| | ||||||||||||||||||||    
T  41815177 tactttatactccttccgatcctatttacaataaacaatttactttttaaatacattaaataatttatgtatttggtt 41815254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 2959389 - 2959321
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    ||||||| ||| ||||| || |||||||||| |||| |||||||||||| | |||||| ||||||||||    
T  2959389 atactccatccggtcctatttacaagaaacaatttactttttagatacattaaataatatatgtatttg 2959321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 2967858 - 2967790
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    ||||||| ||| ||||| || |||||||||| |||| |||||||||||| | |||||| ||||||||||    
T  2967858 atactccatccggtcctatttacaagaaacaatttactttttagatacattaaataatatatgtatttg 2967790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 36417196 - 36417128
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttgg 231  Q
    |||||||||  ||||| || | |||||||| |||| |||||||||||| | ||||||||||||||||||    
T  36417196 tactccctctggtcctatttataagaaacaatttactttttagatacattaaataatttatgtatttgg 36417128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 41046830 - 41046898
Alignment:
Q  166 tccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||| ||||| || |||||| ||| | || |||||||||||| | |||||||||||||||||||||    
T  41046830 tccctccggtcctatttacaagagacaatctactttttagatacattaaataatttatgtatttggttt 41046898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 23411162 - 23411235
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||||| ||| | || | |||| |||  ||| |||||||||||| | |||||||||||||||||||||    
T  23411162 tatactccctccggtcatatttataagatacaaattactttttagatacattaaataatttatgtatttggttt 23411235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 29374320 - 29374255
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    ||||||||||| ||||| || |||||| ||| || | |||||||||||| |||||||| |||||||    
T  29374320 atactccctccggtcctatttacaagagacagttgactttttagatacattgaataatgtatgtat 29374255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 1643342 - 1643410
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    ||||| ||||| ||||| || |||| | ||| |||| |||||||||||| |||| ||||||||||||||    
T  1643342 atactacctccggtcctatttacaatagacaatttactttttagatacattgaaaaatttatgtatttg 1643410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 2825894 - 2825930
Alignment:
Q  198 ttttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||||| | |||||||||||||||||||||    
T  2825894 ttttttagatacattaaataatttatgtatttggttt 2825930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 37699779 - 37699843
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    |||||||||| ||||| || |||||| ||| || | |||||||||||| |||||||| |||||||    
T  37699779 tactccctccggtcctatttacaagagacagttgactttttagatacattgaataatgtatgtat 37699843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 14768093 - 14768168
Alignment:
Q  159 tttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  14768093 tttatactccctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 14768168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 3484328 - 3484402
Alignment:
Q  160 ttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||||||||||| || |||||| ||| || |||||||||||||| | |||| ||||||||||||||||    
T  3484328 ttatactccctccagtcctatttacaagagacaattaattttttagatacattaaatagtttatgtatttggttt 3484402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 23825146 - 23825219
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||||| |||| || |||||||||| |||| ||||||||||||   |||||||||||||||||||||    
T  23825146 tatactccctccaatcctatttacaagaaacaatttactttttagatacatcaaataatttatgtatttggttt 23825219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 8243832 - 8243760
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| ||||| ||||| || |||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  8243832 atactacctccggtcctatttacaagagacaatttactttttagatacattgaataatttatgtatttggttt 8243760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 10049666 - 10049738
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| ||||| ||||| || |||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  10049666 atactacctccggtcctatttacaagagacaatttactttttagatacattgaataatttatgtatttggttt 10049738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 28945654 - 28945726
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  28945654 atactccctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 28945726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 40142024 - 40141952
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| ||| ||||||| || |||||||||| |||| |||||||||||| | |||||||||||||||||||||    
T  40142024 atacttccttcagtcctatttacaagaaacaatttactttttagatacattaaataatttatgtatttggttt 40141952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 379069 - 379140
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||||| ||| || |||||||||||||| | |||||||||||||||||||||    
T  379069 tactccctccggtcctatttacaagagacaattaattttttagatacattaaataatttatgtatttggttt 379140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 9440277 - 9440206
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| ||||| ||||| || |||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  9440277 tactacctccggtcctatttacaagagacaatttactttttagatacattgaataatttatgtatttggttt 9440206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 19202399 - 19202328
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||| ||||| |||| |||||||||||| | |||||||||||||||||||||    
T  19202399 tactccctccggtcctatttacaaaaaacaatttactttttagatacattaaataatttatgtatttggttt 19202328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 6087045 - 6086979
Alignment:
Q  168 cctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| ||||| || |||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  6087045 cctccggtcctatttacaagagacaatttactttttagatacattgaataatttatgtatttggttt 6086979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 49122945 - 49123014
Alignment:
Q  165 ctccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  49122945 ctccctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 49123014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 18765408 - 18765336
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||| ||| ||||| || |||||||||| |||| ||||||||| || | |||||||||||||||||||||    
T  18765408 atactccttccggtcctatttacaagaaacaatttactttttagatgcattaaataatttatgtatttggttt 18765336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 28565085 - 28565013
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||| | ||||| || |||||| ||| |||||||||||||| || | |||||||||||||||||||||    
T  28565085 atactcccttcggtcctatttacaagagacaatttattttttagatgcattaaataatttatgtatttggttt 28565013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 26999020 - 26999091
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| ||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  26999020 tactacctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 26999091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 29019734 - 29019805
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||||| ||| ||||  ||||||||||| | |||||||||||||||||||||    
T  29019734 tactccctccggtcctatttacaagagacaatttacattttagatacattaaataatttatgtatttggttt 29019805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 47449915 - 47449986
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||  |||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  47449915 tactccctccgatcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 47449986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 48593292 - 48593222
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggt 232  Q
    ||||||||||| ||||| |  ||||||||||  | ||||||||||| || |||||||||||||||||||||    
T  48593292 atactccctccggtcctatatacaagaaacaagtaattttttagattcattgaataatttatgtatttggt 48593222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 48643753 - 48643687
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtattt 229  Q
    ||||||||||||||||| | |||||||||| || | ||||||||| || ||||||||| ||||||||    
T  48643753 tactccctccagtccttattacaagaaacaattgactttttagattcattgaataattaatgtattt 48643687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 51698266 - 51698192
Alignment:
Q  160 ttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||||   |||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  51698266 ttatactccctctgatcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 51698192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 52114168 - 52114102
Alignment:
Q  168 cctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| |||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  52114168 cctctagtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 52114102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 335518 - 335453
Alignment:
Q  169 ctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| ||||| || |||| ||||| |||| |||||||||||| | |||||||||||||||||||||    
T  335518 ctccggtcctatttacaaaaaacaatttactttttagatacattaaataatttatgtatttggttt 335453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 25113496 - 25113427
Alignment:
Q  165 ctccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||| ||||| || |||||| ||| |||| ||||| |||||| | |||||||||||||||||||||    
T  25113496 ctccctccggtcctatttacaagagacaatttactttttcgatacattaaataatttatgtatttggttt 25113427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 42605825 - 42605890
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    ||||||||||||||||| || |||||| | | || |||||||||||||| |||||||| |||||||    
T  42605825 atactccctccagtcctatttacaagataaagttgattttttagatacattgaataatgtatgtat 42605890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 21653486 - 21653422
Alignment:
Q  170 tccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||| || |||||| ||| |||| |||||||||||| | ||||||||||| |||||||||    
T  21653486 tccagtcctatttacaagagacaatttactttttagatacattaaataatttatgcatttggttt 21653422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 9465220 - 9465153
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    |||||||||| ||||| || |||||| ||| |||| ||||||||||||   |||||||||||||||||    
T  9465220 tactccctccggtcctatttacaagagacaatttactttttagatacataaaataatttatgtatttg 9465153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 10049820 - 10049753
Alignment:
Q  160 ttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    ||||||||||||| ||||| || |||||| ||| || | |||||||||||| |||||||| |||||||    
T  10049820 ttatactccctccggtcctatttacaagagacaattgactttttagatacattgaataatgtatgtat 10049753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 6086898 - 6086964
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    |||||||||||| ||||| || |||||| ||| || | |||||||||||| |||||||| |||||||    
T  6086898 tatactccctccggtcctatttacaagagacagttgactttttagatacattgaataatgtatgtat 6086964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 25846663 - 25846589
Alignment:
Q  160 ttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||| | ||| ||||| || |||||| ||| |||| |||||| ||||| | |||||||||||||||||||||    
T  25846663 ttatactacttccggtcctatttacaagagacaatttactttttaaatacattaaataatttatgtatttggttt 25846589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 28406465 - 28406535
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggt 232  Q
    ||||||||||| ||||| || |||||||||| || | ||||||||| |  ||||||||| |||||||||||    
T  28406465 atactccctccggtcctatttacaagaaacaattgactttttagattcgttgaataattaatgtatttggt 28406535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 26999171 - 26999106
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    ||||||||||| ||||| || |||||| ||| || | |||||||||||| |||||||| |||||||    
T  26999171 atactccctccggtcctatttacaagagacatttgactttttagatacattgaataatgtatgtat 26999106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 28406618 - 28406553
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgta 226  Q
    |||||||||||| ||||| || |||||||||| || | ||||||| | || |||||||||||||||    
T  28406618 tatactccctccggtcctatttacaagaaacaattgactttttaggttcattgaataatttatgta 28406553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 40215051 - 40214982
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    |||||||||||| ||||| || | |||| |||  ||| |||||||||||| | |||||||||||||||||    
T  40215051 tatactccctccggtcctatttataagagacaagttactttttagatacattaaataatttatgtatttg 40214982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 42225561 - 42225625
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    |||||||||| ||||  || |||||||| | || |||||||||||||| |||||||| |||||||    
T  42225561 tactccctccggtcccatttacaagaaaaaattaattttttagatacattgaataatgtatgtat 42225625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 42605977 - 42605905
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||| |||||  | |||||| ||| |||| ||||||||||||   |||||||||||||||| ||||    
T  42605977 atactccctccggtcctacttacaagagacaatttactttttagatacataaaataatttatgtatttagttt 42605905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 44593319 - 44593279
Alignment:
Q  194 tttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| |||||||||||| | |||||||||||||||||||||    
T  44593319 tttaatttttagatacattaaataatttatgtatttggttt 44593279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 55139195 - 55139239
Alignment:
Q  186 agaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    ||||||| || | |||||||||||| |||||||||||||||||||    
T  55139195 agaaacaattgactttttagatacattgaataatttatgtatttg 55139239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 2339287 - 2339360
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  2339287 tatactccctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 2339360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 22781880 - 22781952
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| |||||| ||||| || |||||||||| |||| |||||||||||| | |||||||||||||||||||||    
T  22781880 atacaccctccggtcctatttacaagaaacaatttactttttagatacattaaataatttatgtatttggttt 22781952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 29916526 - 29916598
Alignment:
Q  163 tactccctccagtccttttcacaagaaacacttta-ttttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||| |||||| || |||||||||| |||| ||||||||||||| | |||||||||||||||||||||    
T  29916526 tactccctctagtcctatttacaagaaacaatttacttttttagatacattaaataatttatgtatttggttt 29916598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 2229219 - 2229148
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| ||||| ||||| || |||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  2229219 tactacctccggtcctatttacaagagacaatttactttttagatacattgaataatttatgtatttggttt 2229148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 29563657 - 29563728
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  29563657 tactccctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 29563728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 34028382 - 34028453
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || ||||| |||| |||| |||||||||||| | |||||||||||||||||||||    
T  34028382 tactccctccggtcctatttacaagtaacaatttactttttagatacattaaataatttatgtatttggttt 34028453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 41915591 - 41915664
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||||| ||||| || | |||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  41915591 tatactccctccggtcctatttataagagacaatttaatttttagatacattaaataatttatgtatttggttt 41915664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 12270202 - 12270134
Alignment:
Q  166 tccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  12270202 tccctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 12270134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 7668210 - 7668261
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| ||| ||||||||||||||||| | |||||||||||||||||||||    
T  7668210 acaagagacaatttattttttagatacattaaataatttatgtatttggttt 7668261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 33642457 - 33642528
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||||| | | |||| |||||||||||| | |||||||||||||||||||||    
T  33642457 tactccctccggtcctatttacaagagataatttactttttagatacattaaataatttatgtatttggttt 33642528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 45145868 - 45145939
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||| ||||||||    
T  45145868 tactccctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtttttggttt 45145939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 5311474 - 5311405
Alignment:
Q  159 tttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtattt 229  Q
    ||||||||||||| ||| ||| | ||||||||||| ||||||||||||| || ||||||||| ||||||||    
T  5311474 tttatactccctc-agttcttattacaagaaacacattattttttagattcattgaataattaatgtattt 5311405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 32159182 - 32159112
Alignment:
Q  164 actccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||  |||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  32159182 actccctccgatcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 32159112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 2229068 - 2229133
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    ||||||||||| ||||| || |||||| ||| || | ||||||||||||||||||||| |||||||    
T  2229068 atactccctccggtcctatttacaagagacagttgactttttagatacaatgaataatgtatgtat 2229133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 34157658 - 34157731
Alignment:
Q  162 atactccctccagtccttttcacaagaaacacttta-ttttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||||| |||| || |||||| | | |||| ||||||||||||| | |||||||||||||||||||||    
T  34157658 atactccctccaatcctatttacaagagataatttacttttttagatacattaaataatttatgtatttggttt 34157731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 43135074 - 43135114
Alignment:
Q  194 tttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  43135074 tttactttttagatacattgaataatttatgtatttggttt 43135114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 25847986 - 25848037
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  25847986 acaagagacaatttactttttagatacattaaataatttatgtatttggttt 25848037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 41569225 - 41569175
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttggtt 233  Q
    |||||||||| |||| |||||||||| | | ||||||||||||||||||||    
T  41569225 acaagaaacaatttactttttagatatattaaataatttatgtatttggtt 41569175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 30924072 - 30923999
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| ||||| ||||| || | || | ||| |||| |||||||||||| | |||||||||||||||||||||    
T  30924072 tatactacctccggtcctatttataaaagacaatttactttttagatacattaaataatttatgtatttggttt 30923999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 37564769 - 37564709
Alignment:
Q  174 gtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| || |||||| ||| |||| |||||| ||||| | |||||||||||||||||||||    
T  37564769 gtcctatttacaagagacaatttactttttaaatacattaaataatttatgtatttggttt 37564709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 40465356 - 40465316
Alignment:
Q  194 tttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| |||||||||||| | |||||||||||||||||||||    
T  40465356 tttactttttagatacattaaataatttatgtatttggttt 40465316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 40834170 - 40834206
Alignment:
Q  198 ttttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||||| | |||||||||||||||||||||    
T  40834170 ttttttagatacattaaataatttatgtatttggttt 40834206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 42351336 - 42351280
Alignment:
Q  174 gtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    ||||| || |||||| ||| ||||||||||||||||| | |||||||||| ||||||    
T  42351336 gtcctatttacaagagacaatttattttttagatacattaaataatttatatatttg 42351280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 24949781 - 24949709
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  24949781 atactccctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 24949709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 390954 - 390883
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  390954 tactccctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 390883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 766576 - 766505
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||||| | | ||||||||||||||||| | |||||||||||||||||||||    
T  766576 tactccctccggtcctatttacaagagataatttattttttagatacattaaataatttatgtatttggttt 766505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 6801693 - 6801629
Alignment:
Q  170 tccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||| || |||||||||| |||| |||||||||||| | ||||||| |||||||||||||    
T  6801693 tccagtcctatttacaagaaacaatttactttttagatacattaaataattcatgtatttggttt 6801629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 7405442 - 7405514
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||| | ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  7405442 atactcccttcggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 7405514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 22898851 - 22898923
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| ||||| ||||| || |||||| ||| |||| |||||||||||| |||||||||||| ||||||||||    
T  22898851 atactacctccggtcctatttacaagagacaatttactttttagatacattgaataatttatatatttggttt 22898923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 30686543 - 30686614
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| |||||||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||| ||||    
T  30686543 tactctctccagtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttcgttt 30686614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 6045831 - 6045763
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    ||||||||||| ||||| || |||||| ||| |||| |||||||||| | | |||||||||||||||||    
T  6045831 atactccctccggtcctatttacaagagacaatttactttttagatagattaaataatttatgtatttg 6045763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 22880916 - 22880988
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| ||||| ||||| || |||||| ||| |||| |||||||||||| |||||||||||| ||||| ||||    
T  22880916 atactacctccggtcctatttacaagagacaatttactttttagatacattgaataatttatatatttagttt 22880988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 33859488 - 33859560
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||| | ||||| || |||| | ||| |||| |||||||||||| | |||||||||||||||||||||    
T  33859488 atactcccttcggtcctatttacaatagacaatttactttttagatacattaaataatttatgtatttggttt 33859560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 8559042 - 8558992
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| ||| ||||||||||||||||| | |||||||||||||||||||||    
T  8559042 acaagagacaatttattttttagataca-taaataatttatgtatttggttt 8558992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 17225392 - 17225321
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||  |||| || |||||| ||| |||| |||||||||||| | |||||||||| ||||||||||    
T  17225392 tactccctccgatcctatttacaagagacaatttactttttagatacattaaataatttatatatttggttt 17225321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 31971179 - 31971108
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| ||||| ||||| || |||||| ||| ||||  ||||||||||| | |||||||||||||||||||||    
T  31971179 tactacctccggtcctatttacaagagacaatttacattttagatacattaaataatttatgtatttggttt 31971108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 885599 - 885665
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    |||||||||||| ||||| || |||||| ||| || | |||||||||||| |||||||| |||||||    
T  885599 tatactccctccggtcctatttacaagagacagttgactttttagatacattgaataatgtatgtat 885665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 14558010 - 14557964
Alignment:
Q  29 cacacttcgaggtcccaatctaacaccaccggaccaacccaagtggg 75  Q
    |||||||| ||||||||| | ||||||||| ||||||||||||||||    
T  14558010 cacacttccaggtcccaagccaacaccaccagaccaacccaagtggg 14557964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 8558912 - 8558977
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    ||||||||||||||||| || |||||| | | || | |||||||||||| |||||||| |||||||    
T  8558912 atactccctccagtcctatttacaagagaaaattgactttttagatacattgaataatgtatgtat 8558977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 14931279 - 14931328
Alignment:
Q  185 aagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  14931279 aagagacaatttactttttagatacattaaataatttatgtatttggttt 14931328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 34639167 - 34639118
Alignment:
Q  185 aagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| ||| |||| |||||||||||| |||| ||||||||||||||||||    
T  34639167 aagagacaatttactttttagatacattgaaaaatttatgtatttggttt 34639118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 885720 - 885680
Alignment:
Q  194 tttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| |||||||||||| | |||||||||||||||||||||    
T  885720 tttactttttagatacattaaataatttatgtatttggttt 885680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 6047946 - 6047878
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    ||||||||||| ||| | || |||||| | | |||| |||||||||||| | |||||||||||||||||    
T  6047946 atactccctccggtcatatttacaagagataatttactttttagatacattaaataatttatgtatttg 6047878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 14931406 - 14931338
Alignment:
Q  159 tttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    |||||||||||||| ||| | || |||||| ||| || | |||||||||||| |||||||| |||||||    
T  14931406 tttatactccctccggtcatatttacaagagacaattgactttttagatacattgaataatgtatgtat 14931338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 14281588 - 14281660
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| ||||| ||||| || |||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  14281588 atactacctccggtcctatttacaagagacaatttactttttagatacattgaataatttatgtatttggttt 14281660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 34718889 - 34718961
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  34718889 atactccctccggtcctatttacaagagacaatttaatttttagatacattaaataatttatgtatttggttt 34718961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 38830481 - 38830553
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| ||||| ||||| || |||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  38830481 atactacctccggtcctatttacaagagacaatttactttttagatacattgaataatttatgtatttggttt 38830553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 28989271 - 28989342
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||| | ||||| || |||||||||| |||| |||||||||||| | |||||||||||||||||||||    
T  28989271 tactcccttcggtcctatttacaagaaacaatttactttttagatacattaaataatttatgtatttggttt 28989342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 1674122 - 1674050
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||   |||| || |||||| ||| ||||||||||||||||| | |||||||||||||||||||||    
T  1674122 atactccctcggatcctatttacaagagacaatttattttttagatacattaaataatttatgtatttggttt 1674050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 2961254 - 2961182
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||  ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  2961254 atactccctctggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 2961182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 9548670 - 9548738
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    ||||| ||||| ||||| || |||||||||| |||| |||||||||||| | |||||||||||||||||    
T  9548670 atacttcctccggtcctatttacaagaaacaatttactttttagatacattaaataatttatgtatttg 9548738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 10380540 - 10380468
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||  ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  10380540 atactccctctggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 10380468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 23398078 - 23398150
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| ||||| ||||| || |||||| |||  ||| |||||||||||| |||||||||||||||||||||||    
T  23398078 atactacctccggtcctatttacaagagacaacttactttttagatacattgaataatttatgtatttggttt 23398150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 28359209 - 28359149
Alignment:
Q  174 gtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| || |||||||||| |||| |||||||||||| | |||||||||||||||||||||    
T  28359209 gtcctatttacaagaaacaatttactttttagatacattaaataatttatgtatttggttt 28359149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 33325328 - 33325403
Alignment:
Q  159 tttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||||||  || | || |||||| ||| ||||||||||||||||| | |||||||||||||| ||||||    
T  33325328 tttatactccctccgatcatatttacaagagacaatttattttttagatacattaaataatttatgtatctggttt 33325403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 2352307 - 2352379
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| ||||| ||||| || |||||| ||| |||| |||||||||| | | |||||||||||||||||||||    
T  2352307 atactacctccggtcctatttacaagagacaatttactttttagatatattaaataatttatgtatttggttt 2352379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 2352462 - 2352394
Alignment:
Q  159 tttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    |||||||||||||| ||||| || |||||| ||| || | |||||||||||| |||||||| |||||||    
T  2352462 tttatactccctccggtcctatttacaagagacagttgactttttagatacattgaataatgtatgtat 2352394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 7796208 - 7796168
Alignment:
Q  194 tttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  7796208 tttattttttagatacattaaataatttatgtatttggttt 7796168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 9302069 - 9301997
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| ||||| ||||| || | |||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  9302069 atactacctccggtcctatttataagagacaatttactttttagatacattaaataatttatgtatttggttt 9301997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 23537471 - 23537399
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| ||||  |||| || |||||| ||| ||||||||||||||| | | |||||||||||||||||||||    
T  23537471 atactctctccgatcctatttacaagagacaatttattttttagataaattaaataatttatgtatttggttt 23537399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 26733783 - 26733855
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| |||| ||||| || |||||||||| || | |||||||||||| | |||||| ||||||||||||||    
T  26733783 atactctctccggtcctatttacaagaaacaattaactttttagatacattaaataatctatgtatttggttt 26733855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 29312438 - 29312505
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    |||| ||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||    
T  29312438 tacttcctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttg 29312505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 40161302 - 40161251
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  40161302 acaagagacaatttactttttagatacattaaataatttatgtatttggttt 40161251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 10065252 - 10065318
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    |||||||||||| ||||| || |||||| | | || |||||||||||||| |||||||| |||||||    
T  10065252 tatactccctccggtcctatttacaagagaaaattgattttttagatacattgaataatgtatgtat 10065318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 34228938 - 34228876
Alignment:
Q  13 gagactttgagagtaccacacttcgaggtcccaatctaacaccaccggaccaacccaagtggg 75  Q
    ||||| ||||||| | |||||| ||||||||||| | ||||||||| ||||||| ||||||||    
T  34228938 gagaccttgagaggaacacactccgaggtcccaagccaacaccaccagaccaactcaagtggg 34228876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 37047049 - 37046987
Alignment:
Q  13 gagactttgagagtaccacacttcgaggtcccaatctaacaccaccggaccaacccaagtggg 75  Q
    ||||| ||||||| | |||||| | ||||||||| | ||||||||| ||||||||||||||||    
T  37047049 gagaccttgagaggagcacactccaaggtcccaagccaacaccaccagaccaacccaagtggg 37046987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 45536310 - 45536241
Alignment:
Q  165 ctccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||| ||||| || |||||| | | |||| ||||||||||||   |||||||||||||||||||||    
T  45536310 ctccctccggtcctatttacaagagataatttactttttagatacatcaaataatttatgtatttggttt 45536241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 46320300 - 46320227
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||||   |||| || |||||| ||| |||| ||||||||||||   |||||||||||||||||||||    
T  46320300 tatactccctctgttcctatttacaagagacaatttactttttagatacatcaaataatttatgtatttggttt 46320227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 10065405 - 10065337
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    ||||| |||||  |||| || |||| ||||| |||| |||||||||||| | |||||||||||||||||    
T  10065405 atacttcctccgatcctatttacaaaaaacaatttactttttagatacattaaataatttatgtatttg 10065337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 35427808 - 35427737
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  35427808 tactccctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 35427737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 34281820 - 34281747
Alignment:
Q  161 tatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| | || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  34281820 tatactcccttcagtcttatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 34281747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 5909621 - 5909549
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| ||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  5909621 atacttcctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 5909549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 10599466 - 10599394
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||||  |||| || |||||| ||| |||||||||||||||||   |||||||||||||||||||||    
T  10599466 atactccctccgatcctatttacaagagacaatttattttttagatacatacaataatttatgtatttggttt 10599394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 12085162 - 12085106
Alignment:
Q  174 gtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttg 230  Q
    |||||||| |||||| ||| ||||||||||||||||| | |||||||||||||||||    
T  12085162 gtcctttttacaagagacagtttattttttagatacattaaataatttatgtatttg 12085106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 12763227 - 12763299
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||| | ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  12763227 atactcccttcggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 12763299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 7463448 - 7463519
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||||||||| |||| |||||| ||||| |  ||||||||||||||||||||    
T  7463448 tactccctccggtcctatttacaagaaacaatttactttttaaatacattacataatttatgtatttggttt 7463519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 23248817 - 23248746
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| ||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  23248817 tactacctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttt 23248746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 7107628 - 7107700
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| |||| ||| | || |||||| ||| || |||||||||||||| | |||||||||||||||||||||    
T  7107628 atactcactccggtcatatttacaagagacaattaattttttagatacattaaataatttatgtatttggttt 7107700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 19979644 - 19979572
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||| || |  || |||| ||||| |||| |||||||||||| | |||||||||||||||||||||    
T  19979644 atactccctccggttccatttacaataaacaatttactttttagatacattaaataatttatgtatttggttt 19979572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 3411351 - 3411402
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  3411351 acaagagacaatttactttttagatacattaaataatttatgtatttggttt 3411402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 5347871 - 5347801
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || |||||| ||| |||| |||| ||||||| | |||||||||||||||||||||    
T  5347871 tactccctccggtcctatttacaagagacaatttactttt-agatacattaaataatttatgtatttggttt 5347801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 20397814 - 20397885
Alignment:
Q  163 tactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||| ||||| || | |||| ||| |||| |||||||||||| | |||||||||||||||| ||||    
T  20397814 tactccctccggtcctatttataagagacaatttaatttttagatacattaaataatttatgtattttgttt 20397885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 23248663 - 23248733
Alignment:
Q  159 tttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtattt 229  Q
    |||||||||||||| ||||| || |||||| | | || | |||||||||||| |||||||| |||||||||    
T  23248663 tttatactccctccggtcctatttacaagataaagttgactttttagatacattgaataatatatgtattt 23248733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 30866266 - 30866315
Alignment:
Q  185 aagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  30866266 aagagacaatttactttttagatacattaaataatttatgtatttggttt 30866315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 12426680 - 12426608
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| ||||| ||| | || |||||| ||| |||| |||||||||||| | ||||||||| |||||||||||    
T  12426680 atacttcctccggtcttatttacaagagacagtttactttttagatacattaaataatttacgtatttggttt 12426608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 29770352 - 29770392
Alignment:
Q  194 tttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| |||||||||||| | |||||||||||||||||||||    
T  29770352 tttactttttagatacattaaataatttatgtatttggttt 29770392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 35952 - 36024
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||| ||||| || |||||| ||| |||| |||||||||||| | |||||||||||||||| ||||    
T  35952 atactccctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtattttgttt 36024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2107 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold2107
Description:

Target: scaffold2107; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 453 - 513
Alignment:
Q  174 gtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||| || |||||||||| |||| |||||||||||| | |||||||||||||||| ||||    
T  453 gtcctatttacaagaaacaatttactttttagatacattaaataatttatgtatttcgttt 513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 38844 - 38895
Alignment:
Q  183 acaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||| ||| |||| |||||||||||| | |||||||||||||||||||||    
T  38844 acaagagacaatttactttttagatacattaaataatttatgtatttggttt 38895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 5212 - 5286
Alignment:
Q  160 ttatactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||||||||||||||| || || |||||||||| |||| |||||  ||| | | |||||||||| ||||||||||    
T  5212 ttatactccctccagttctatttacaagaaacaatttacttttttaatatattaaataatttatatatttggttt 5286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 54579 - 54629
Alignment:
Q  177 cttttcacaagaaacactttattttttagatacaatgaataatttatgtat 227  Q
    ||||| |||||||||| ||||||||||| ||||| ||||||| ||||||||    
T  54579 ctttttacaagaaacaatttattttttaaatacattgaataaattatgtat 54629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 234
Target Start/End: Original strand, 15160 - 15225
Alignment:
Q  169 ctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    |||| ||||| || |||| ||||| |||  |||||||||||| | |||||||||||||||||||||    
T  15160 ctcctgtcctatttacaataaacaatttgctttttagatacattaaataatttatgtatttggttt 15225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 77494 - 77423
Alignment:
Q  162 atactccctccagtccttttcacaagaaacactttattttttagatacaatgaataatttatgtatttggttt 234  Q
    ||||||||||| ||||| || | |||| ||| || |||||| ||||||| | |||||||||||||||||||||    
T  77494 atactccctccggtcctatttataagagacaattaattttt-agatacattaaataatttatgtatttggttt 77423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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