View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_105 (Length: 227)
Name: NF18406_low_105
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_105 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 8265028 - 8264809
Alignment:
| Q |
11 |
aaagaggaatgagataaactctttcaggcaaacaaatgaagaaaca--gtctttgaaggatgggaaaggtttaaagatatgttgagaagttgtcctcgtc |
108 |
Q |
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| T |
8265028 |
aaagaggaatgagataaactctttcaggcaaacaaatgaagaaacacagtctttgaaggatgggaaaggtttaaagatctgttgagaaggtgtcctcatc |
8264929 |
T |
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| Q |
109 |
atgggatacatgtgtgcattcaaatggaaaccttttacaatgggtttgttccatcaacaaggcttatggtagatacctcttca-gaggtgcactattgag |
207 |
Q |
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| T |
8264928 |
atgggatacgtgtatgcattcaaatgaaaaccttttacaatgggtttgttccatcaacaaatcttatggtagatgcctcttcaggaggtgcactattgag |
8264829 |
T |
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| Q |
208 |
aaagtcctataaagagtgtt |
227 |
Q |
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| T |
8264828 |
aaagtcctataaagagtgtt |
8264809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 3258797 - 3258941
Alignment:
| Q |
24 |
ataaactctttcaggcaaacaaatgaagaaacagtctttgaaggatgggaaaggtttaaagatatgttgagaagttgtcctcgtcatgggatacatgtgt |
123 |
Q |
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| T |
3258797 |
ataacctctttgaggaaaacaaatgaagaaacactctttgaagaatgtgaaaggtttaaatatatgttgagaaggtgtcctcatcatgggatacatgtgt |
3258896 |
T |
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| Q |
124 |
gcattcaaatggaaaccttttacaatgggtttgttccatcaacaa |
168 |
Q |
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| T |
3258897 |
taattcaaatggaaaccttctacaatgggctagttccatcaacaa |
3258941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 3286283 - 3286428
Alignment:
| Q |
24 |
ataaactctttcaggcaaacaaatgaagaaacagtctttgaaggatgggaaaggtttaaagatatgttgagaagttgtcctcgtcatgggatacatgtgt |
123 |
Q |
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| T |
3286283 |
ataacctctttgaggaaaacaaatgaagaaacactctttgaatcatgggaaaggtttaaatatatgttgagaaggtgtcctcatcatgggatacatgtgt |
3286382 |
T |
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| Q |
124 |
gcattcaaatg-gaaaccttttacaatgggtttgttccatcaacaa |
168 |
Q |
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| T |
3286383 |
taattcaaatgcaaaaccttctacaatgagctagttccatcaacaa |
3286428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 24128597 - 24128647
Alignment:
| Q |
102 |
cctcgtcatgggatacatgtgtgcattcaaatggaaaccttttacaatggg |
152 |
Q |
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| T |
24128597 |
cctcatcatgggatacatgtgtggattcaaatgaaaaacttatacaatggg |
24128647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 30501084 - 30501193
Alignment:
| Q |
39 |
caaacaaatgaagaaacagtctttgaaggatgggaaaggtttaaagatatgttgagaagttgtcctcgtcatgggatacatgtgtgcattcaaatggaaa |
138 |
Q |
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| T |
30501084 |
caaacaaacgaagaaactctttttgaagcttgagaaaggtttaaagaattattgagaaggtgcaatcatcatgggatacctgagtgtattcgaatgaaaa |
30501183 |
T |
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| Q |
139 |
ccttttacaa |
148 |
Q |
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| T |
30501184 |
ccttttacaa |
30501193 |
T |
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