View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_108 (Length: 216)
Name: NF18406_low_108
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_108 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 18821972 - 18822145
Alignment:
| Q |
24 |
aatatactcaaagcatgtgttgtttgattatcaagattgtaagggttttgtgtgaactcacttgagccaacagaaaaagaaagaaagaatgataacgatg |
123 |
Q |
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| T |
18821972 |
aatatactcaaagcatgtgttgtttgattatcaagattgtaagggttttgtgtgaactcacttgagccaacagaaaaag--agta--aatgataacgatg |
18822067 |
T |
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| Q |
124 |
caataaaatatcagttaattgtgtcgttcatcttactccgttgcattgcttacttgtcacaatggggaattctcctttg |
202 |
Q |
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| T |
18822068 |
caataaaatatcagttagttgtgtcgttcatcttactctattgc-ttgcttacttgtcacaatggggaattctcctttg |
18822145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 48 - 158
Target Start/End: Complemental strand, 33450220 - 33450113
Alignment:
| Q |
48 |
tgattatcaagattgta-agggttttgtgtgaactcacttgagccaacagaaaaagaaagaaagaatgataacgatgcaataaaatatcagttaattgtg |
146 |
Q |
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| T |
33450220 |
tgattatcaagattgtatagggttttgtgtgaactcacttgagccaacagaaaatg--agta--aatgataacgatgcaataaaatatcaaatagttgtg |
33450125 |
T |
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| Q |
147 |
tcgttcatctta |
158 |
Q |
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| T |
33450124 |
tcgttcatctta |
33450113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 33448498 - 33448447
Alignment:
| Q |
150 |
ttcatcttactccgttgcattgcttacttgtcacaatggggaattctcctttg |
202 |
Q |
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| T |
33448498 |
ttcatcttactccattgc-ttgcttacttgtcacaatgaggtattctcatttg |
33448447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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