View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_12 (Length: 524)
Name: NF18406_low_12
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 222 - 518
Target Start/End: Original strand, 4305680 - 4305976
Alignment:
| Q |
222 |
caaaacagtatgaatcatcacaacatgacacctatgaattttcaacaacttcctcatctcttcctacaagagattcctattttgggaaactccaggtaca |
321 |
Q |
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| T |
4305680 |
caaaacagtatgaatcatcacaacatgacacctatgaattttcaacaacttcctcatctcttcctacaagagattcctattttgggaaactccaggtgca |
4305779 |
T |
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| Q |
322 |
aacatgttcttttttctacttaacttaacaagttcattaattcataccagtagtatataacatggtcaatttgcattaagttaattgttaaagttgtttt |
421 |
Q |
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| T |
4305780 |
aacatgttcttttttctacttaacttaacaagttcattaattcataccagtagtatataacatggtcaatttgcattaagttaattgttaaagttgtttt |
4305879 |
T |
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| Q |
422 |
attacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgatgt |
518 |
Q |
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| T |
4305880 |
attacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgatgt |
4305976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 360 - 518
Target Start/End: Original strand, 4311172 - 4311333
Alignment:
| Q |
360 |
aattcataccagtagtatataacatggtcaatttgcattaagttaattgttaaagttgttt---tattacagtgtaatgaaggctaatattaagaaggaa |
456 |
Q |
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| T |
4311172 |
aattcatactagaagtatatagcatggtcaatttgcattaaattaattgttaatgttgtttaattattacagtgtaatgaaggctaatattaagaaggag |
4311271 |
T |
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| Q |
457 |
gagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgatgt |
518 |
Q |
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| T |
4311272 |
gagcctagttgtgcacaaatgacaatcttttatgatgggaaagtaattgtgtttgatgatgt |
4311333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 377 - 516
Target Start/End: Original strand, 4300774 - 4300913
Alignment:
| Q |
377 |
tataacatggtcaatttgcattaagttaattgttaaagttgttttattacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaat |
476 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| |
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| T |
4300774 |
tataacatggtcaatttgcattaaattaattgttaatgttgttttattacagtgtaatgaaggctaatattatcaaggaagagcctaaatgtacccaaat |
4300873 |
T |
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| Q |
477 |
gacaatcttgtatgatgggaaagtaattgtgtttgatgat |
516 |
Q |
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| T |
4300874 |
gacaattttttatgatgggaaaataattgtgtttgatgat |
4300913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 231 - 342
Target Start/End: Original strand, 4311019 - 4311130
Alignment:
| Q |
231 |
atgaatcatcacaacatgacacctatgaattttcaacaacttcctcatctcttcctacaagagattcctattttgggaaactccaggtacaaacatgttc |
330 |
Q |
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|||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4311019 |
atgaatcatcacaatataacacctatgaattttcaacaatttcctcatctcttcctacaagagattcctattttgggaaactccaggtacatacatgttc |
4311118 |
T |
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| Q |
331 |
ttttttctactt |
342 |
Q |
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|||||||||||| |
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| T |
4311119 |
ttttttctactt |
4311130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 4305549 - 4305652
Alignment:
| Q |
119 |
tcgtgtgtgtttttagctcctcacatgcataaatacaatatactatagtagtactagtaatagtataaagcttccaccgctctctcatcactctcacttt |
218 |
Q |
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| T |
4305549 |
tcgtgtgtgtttttagctcctcacatgcataaatacaatatacta--gtagtactagtaatagtataaagcttccaccgctctctcttcactctcacttt |
4305646 |
T |
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| Q |
219 |
cttcaa |
224 |
Q |
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|||||| |
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| T |
4305647 |
cttcaa |
4305652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 451 - 516
Target Start/End: Original strand, 4294311 - 4294376
Alignment:
| Q |
451 |
aaggaagagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgat |
516 |
Q |
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| T |
4294311 |
aaggaagagcctagatgtgcacaaatgacaattttttatgatgggaaagtaattgtgtttgatgat |
4294376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 4305471 - 4305526
Alignment:
| Q |
17 |
atgatgtaaccactaacaatggatgtggacctcccaacaccgctagcagtttctgt |
72 |
Q |
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| T |
4305471 |
atgatgcaaccactaacaatggatgtggacctcccaacaccgctagcagtttctgt |
4305526 |
T |
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