View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18406_low_14 (Length: 505)
Name: NF18406_low_14
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_14 |
 | |
|
| [»] scaffold0271 (2 HSPs) |
| | |
|
| [»] scaffold0640 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 14 - 490
Target Start/End: Complemental strand, 33323545 - 33323070
Alignment:
| Q |
14 |
atcagaagaagaaatgttccataacatttgagacaaggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323545 |
atcagaagaagaaatgttccataacatttgagacaaggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaag |
33323446 |
T |
|
| Q |
114 |
taggtccatccacttccaattaaatcaactaaatannnnnnnncctgcaaattgcatctagtttcaagacaactaaatgtccatatatattgccgaaaac |
213 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323445 |
taggttcatccacttccaattaaatcaactaaatattttttt-cctgcaaattgcatctagtttcaagacaactaaatgtccatatatattgccgaaaac |
33323347 |
T |
|
| Q |
214 |
tataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatcgtgtgatatgcatttattacgcaaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323346 |
tataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaa |
33323247 |
T |
|
| Q |
314 |
actgatgagaaatctaactgacattcaaaaacagattagtggtatcctcctgttccaacttacacattgtgaagactcctaaaacaagttcatttctagc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33323246 |
actgatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactgctaaaacaagttcatttctagc |
33323147 |
T |
|
| Q |
414 |
ttccacttttcttaaatagtctctcagccactttctcaccgattactgattactacagtagcaagagagaagagctt |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323146 |
ttccacttttcttaaatagtctctcagccactttctcaccgattactgattactacagtagcaagagagaagagctt |
33323070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 14 - 490
Target Start/End: Complemental strand, 1041954 - 1041479
Alignment:
| Q |
14 |
atcagaagaagaaatgttccataacatttgagacaaggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1041954 |
atcagaagaagaaatgttccataacatttgagacaaggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaag |
1041855 |
T |
|
| Q |
114 |
taggtccatccacttccaattaaatcaactaaatannnnnnnncctgcaaattgcatctagtttcaagacaactaaatgtccatatatattgccgaaaac |
213 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1041854 |
taggttcatccacttccaattaaatcaactaaatattttttt-cctgcaaattgcatctagtttcaagacaactaaatgtccatatatattgccgaaaac |
1041756 |
T |
|
| Q |
214 |
tataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatcgtgtgatatgcatttattacgcaaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1041755 |
tataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaa |
1041656 |
T |
|
| Q |
314 |
actgatgagaaatctaactgacattcaaaaacagattagtggtatcctcctgttccaacttacacattgtgaagactcctaaaacaagttcatttctagc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1041655 |
actgatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactgctaaaacaagttcatttctagc |
1041556 |
T |
|
| Q |
414 |
ttccacttttcttaaatagtctctcagccactttctcaccgattactgattactacagtagcaagagagaagagctt |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1041555 |
ttccacttttcttaaatagtctctcagccactttctcaccgattactgattactacagtagcaagagagaagagctt |
1041479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 490
Target Start/End: Complemental strand, 41200275 - 41199791
Alignment:
| Q |
14 |
atcagaagaagaaatgttccataacatttgagacaaggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41200275 |
atcagaagaagaaatgttccataacatttgagacaaggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaataag |
41200176 |
T |
|
| Q |
114 |
taggtccatccacttccaatta--aa-----------tcaactaaatannnnnnnncctgcaaattgcatctagtttcaagacaactaaatgtccatata |
200 |
Q |
| |
|
||||||| ||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41200175 |
taggtccttccacttccaaattctaacttaggcttcttcaactaaatattttttt-cctgcaaattgcatctagtttcaagacaactaaatgtccatat- |
41200078 |
T |
|
| Q |
201 |
tattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatcgtgtgatatgca |
300 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41200077 |
---tgctgaaaactataaattttgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatcgtgtgatatgca |
41199981 |
T |
|
| Q |
301 |
tttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtggtatcctcctgttccaacttacacattgtgaagactcctaaaacaa |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41199980 |
tttattacgcaaaacatatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactcctaaaacaa |
41199881 |
T |
|
| Q |
401 |
gttcatttctagcttccacttttcttaaatagtctctcagccactttctcaccgattactgattactacagtagcaagagagaagagctt |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41199880 |
gttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccgattactgattactacagtagcaagagagaagagctt |
41199791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 401
Target Start/End: Complemental strand, 41193019 - 41192633
Alignment:
| Q |
14 |
atcagaagaagaaatgttccataacatttgagacaaggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41193019 |
atcagaagaagaaatgttccataacatttgagacaaggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaag |
41192920 |
T |
|
| Q |
114 |
taggtccatccacttccaattaaatcaactaaatannnnnnnncctgcaaattgcatctagtttcaagacaactaaatgtccatatatattgccgaaaac |
213 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41192919 |
taggttcatccacttccaattaaatcaactaaatattttttt-cctgcaaattgcatctagtttcaagacaactaaatgtccatatatattgccgaaaac |
41192821 |
T |
|
| Q |
214 |
tataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgataagaaagaatgaatcgtgtgatatgcatttattacgcaaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41192820 |
tataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaa |
41192721 |
T |
|
| Q |
314 |
actgatgagaaatctaactgacattcaaaaacagattagtggtatcctcctgttccaacttacacattgtgaagactcctaaaacaag |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41192720 |
actgatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactgctaaaacaag |
41192633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 41407708 - 41407590
Alignment:
| Q |
14 |
atcagaagaagaaatgttccataacatttgagacaaggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
41407708 |
atcagaagaagaaatgttccataacatttgagactaggtatcaaccaactaaatcatgctagcttacattatcctaaaatggatgtcctttgaaaacatg |
41407609 |
T |
|
| Q |
114 |
taggtccatccacttccaa |
132 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
41407608 |
taggtccatccacttccaa |
41407590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 157 - 334
Target Start/End: Complemental strand, 41407555 - 41407385
Alignment:
| Q |
157 |
cctgcaaattgcatctagtttcaagacaactaaat-gtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaag |
255 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| | |||| | |||| ||||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
41407555 |
cctgcaaattgcatctagttttaagacaactaaattgtccatat----taccgaga----taaaatctgtcaactttcatactttttgttttgcagcaag |
41407464 |
T |
|
| Q |
256 |
gcagtcccaaatactgataagaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactga |
334 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| ||||| ||||| || ||||||||||||| ||||||||||||||||| |
|
|
| T |
41407463 |
gcagttccaaatactgattagaaagaatgaatagtgtgttatgctttaattacgcaaaactaatgagaaatctaactga |
41407385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 23790 - 23908
Alignment:
| Q |
14 |
atcagaagaagaaatgttccataacatttgagacaaggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
23790 |
atcagaagaagaaatgttccataacatttgagactaggtatcaaccaactaaatcatgctagcttacattatcctaaaatggatgtcctttgaaaacatg |
23889 |
T |
|
| Q |
114 |
taggtccatccacttccaa |
132 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
23890 |
taggtccatccacttccaa |
23908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 157 - 334
Target Start/End: Original strand, 23943 - 24113
Alignment:
| Q |
157 |
cctgcaaattgcatctagtttcaagacaactaaat-gtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaag |
255 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| | |||| | |||| ||||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
23943 |
cctgcaaattgcatctagttttaagacaactaaattgtccatat----taccgaga----taaaatctgtcaactttcatactttttgttttgcagcaag |
24034 |
T |
|
| Q |
256 |
gcagtcccaaatactgataagaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactga |
334 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
24035 |
gcagttccaaatactgattagaaagaatgaatagtgtgttatgctttaattacgcaaaactgatgagaaatctaactga |
24113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 3234 - 3342
Alignment:
| Q |
14 |
atcagaagaagaaatgttccataacatttgagacaaggtatcaaccaattaaatcatgctagcttacattatcctaaaattgatgtcctttgaaaacaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
3234 |
atcagaagaagaaatgttccataacatttgagactaggtatcaaccaactaaatcatgctagcttacattatcctaaaatggatgtcctttgaaaacatg |
3333 |
T |
|
| Q |
114 |
taggtccat |
122 |
Q |
| |
|
||||||||| |
|
|
| T |
3334 |
taggtccat |
3342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 157 - 334
Target Start/End: Original strand, 3379 - 3549
Alignment:
| Q |
157 |
cctgcaaattgcatctagtttcaagacaactaaat-gtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaag |
255 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| | |||| | |||| ||||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
3379 |
cctgcaaattgcatctagttttaagacaactaaattgtccatat----taccgaga----taaaatctgtcaactttcatactttttgttttgcagcaag |
3470 |
T |
|
| Q |
256 |
gcagtcccaaatactgataagaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactga |
334 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
3471 |
gcagttccaaatactgattagaaagaatgaatagtgtgttatgctttaattacgcaaaactgatgagaaatctaactga |
3549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 243 - 392
Target Start/End: Original strand, 16700352 - 16700496
Alignment:
| Q |
243 |
gttttgcagcaaggcagtcccaaatactgataagaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaa |
342 |
Q |
| |
|
||||||||||||| || |||||| | |||||||||||||| | | || ||||||||||||| |||||||||||||||| ||||||||| |||| || |
|
|
| T |
16700352 |
gttttgcagcaagtcaaacccaaaaaatgataagaaagaataa----tatggtatgcatttattatgcaaaactgatgagaagtctaactgatattcgaa |
16700447 |
T |
|
| Q |
343 |
aacagattagtggtatcctcctgttccaacttacacattgtgaagactcc |
392 |
Q |
| |
|
|||| || ||| | ||||| ||||| ||||| ||||||||| |||||||| |
|
|
| T |
16700448 |
aacatatcagtcgcatcctgctgtttcaactgacacattgt-aagactcc |
16700496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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