View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18406_low_18 (Length: 470)

Name: NF18406_low_18
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18406_low_18
NF18406_low_18
[»] chr4 (8 HSPs)
chr4 (1-459)||(28929789-28930253)
chr4 (209-266)||(10185559-10185616)
chr4 (27-87)||(42508382-42508442)
chr4 (1-88)||(5609202-5609289)
chr4 (27-89)||(23639760-23639822)
chr4 (27-89)||(23645418-23645480)
chr4 (27-87)||(24273358-24273418)
chr4 (28-88)||(36131510-36131570)
[»] chr2 (15 HSPs)
chr2 (1-86)||(43963866-43963951)
chr2 (1-80)||(26176206-26176284)
chr2 (27-88)||(8192352-8192413)
chr2 (27-88)||(14486961-14487022)
chr2 (1-89)||(31778141-31778229)
chr2 (4-68)||(35943797-35943861)
chr2 (1-88)||(15038069-15038156)
chr2 (1-88)||(41329952-41330039)
chr2 (27-89)||(6006889-6006951)
chr2 (27-89)||(6714294-6714356)
chr2 (6-88)||(7250339-7250420)
chr2 (42-88)||(9946676-9946722)
chr2 (48-88)||(714125-714165)
chr2 (28-88)||(13747500-13747560)
chr2 (192-256)||(35123588-35123652)
[»] chr5 (8 HSPs)
chr5 (6-88)||(4603892-4603974)
chr5 (1-88)||(32059440-32059527)
chr5 (41-88)||(10837446-10837493)
chr5 (6-89)||(15485290-15485373)
chr5 (6-88)||(18207322-18207404)
chr5 (27-69)||(31206379-31206421)
chr5 (27-64)||(16247025-16247062)
chr5 (27-72)||(23016719-23016764)
[»] chr3 (16 HSPs)
chr3 (1-88)||(48977498-48977585)
chr3 (27-88)||(50731237-50731298)
chr3 (27-88)||(50781556-50781617)
chr3 (40-88)||(7195956-7196004)
chr3 (1-69)||(34844488-34844555)
chr3 (1-88)||(10083819-10083906)
chr3 (1-88)||(10190742-10190829)
chr3 (27-66)||(26599450-26599489)
chr3 (29-72)||(53167681-53167724)
chr3 (27-69)||(3869845-3869887)
chr3 (27-89)||(10538126-10538187)
chr3 (27-89)||(10682815-10682876)
chr3 (31-69)||(40302665-40302703)
chr3 (27-65)||(51532925-51532963)
chr3 (27-88)||(15566500-15566561)
chr3 (31-87)||(49030043-49030099)
[»] scaffold0026 (1 HSPs)
scaffold0026 (27-88)||(5967-6028)
[»] chr7 (11 HSPs)
chr7 (27-88)||(12211535-12211596)
chr7 (28-73)||(674451-674496)
chr7 (27-88)||(38372980-38373041)
chr7 (8-88)||(11909954-11910034)
chr7 (28-88)||(27009501-27009561)
chr7 (1-88)||(42913513-42913600)
chr7 (27-88)||(654705-654766)
chr7 (35-88)||(2344447-2344500)
chr7 (27-88)||(27312292-27312353)
chr7 (32-88)||(17279676-17279732)
chr7 (1-69)||(23636584-23636652)
[»] chr6 (5 HSPs)
chr6 (1-86)||(17149458-17149543)
chr6 (1-87)||(9239085-9239171)
chr6 (1-88)||(9208362-9208449)
chr6 (27-89)||(28672203-28672265)
chr6 (1-69)||(6383893-6383962)
[»] scaffold0049 (1 HSPs)
scaffold0049 (1-88)||(66864-66951)
[»] chr8 (6 HSPs)
chr8 (2-69)||(9126482-9126549)
chr8 (29-88)||(34694575-34694634)
chr8 (1-87)||(28193588-28193674)
chr8 (27-88)||(2166836-2166897)
chr8 (27-88)||(32879419-32879480)
chr8 (40-88)||(4584980-4585028)
[»] chr1 (10 HSPs)
chr1 (27-89)||(1486556-1486618)
chr1 (6-66)||(20999185-20999245)
chr1 (1-65)||(30677286-30677350)
chr1 (27-87)||(37351454-37351514)
chr1 (27-89)||(1379033-1379095)
chr1 (1-87)||(34778449-34778535)
chr1 (27-89)||(52135262-52135324)
chr1 (27-88)||(27159221-27159282)
chr1 (8-69)||(37047109-37047170)
chr1 (27-88)||(39714650-39714711)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-88)||(161919-162006)
[»] scaffold0102 (1 HSPs)
scaffold0102 (6-88)||(39207-39289)
[»] scaffold0015 (1 HSPs)
scaffold0015 (27-69)||(72545-72587)
[»] scaffold0160 (1 HSPs)
scaffold0160 (31-88)||(29143-29200)
[»] scaffold0623 (1 HSPs)
scaffold0623 (1-89)||(1056-1143)


Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 28929789 - 28930253
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttttgnnnnnnnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  28929789 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttttgaaaaaagaca 28929888  T
Q  101 nnnnncatactaacattgactgtttaaagaaaaaagtaaggtcagtaagttgtatgaggttggtttaaacatataatgatgttattaaggaatgtaactt 200  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28929889 aaaaacatactaacattgactgtttaaagaaaaaagtaaggtcagtaagttgtatgaggttggtttaaacatataatgatgttattaaggaatgtaactt 28929988  T
Q  201 tgaaggttgagtattttgatttatgaatggttaattctatgaagcacatacattcttgggtttagtcgcatcaacgaaccatggtgtcaatcacggattt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28929989 tgaaggttgagtattttgatttatgaatggttaattctatgaagcacatacattcttgggtttagtcgcatcaacgaaccatggtgtcaatcacggattt 28930088  T
Q  301 cagaaaatagtggtatgttcaaattaatcacctcagtgaacctccctgttcaaatactg---nnnnnnnnnaac---cttggcgctctatcagttaaaag 394  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||            |||   |||||||||||||||||||||||    
T  28930089 cagaaaatagtgttatgttcaaattaatcacctcagtgaacctccctgttcaaatactgttttttttttttaaccttcttggcgctctatcagttaaaag 28930188  T
Q  395 gtgatggtatttctgtcaggttggaatgaattgttttctggttttgctgcaatcggtctgtgctg 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28930189 gtgatggtatttctgtcaggttggaatgaattgttttctggttttgctgcaatcgttctgtgctg 28930253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 10185559 - 10185616
Alignment:
Q  209 gagtattttgatttatgaatggttaattctatgaagcacatacattcttgggtttagt 266  Q
    ||||||||| |||||||||||   |||||||||||||||||||| |||||||||||||    
T  10185559 gagtattttaatttatgaatgtaaaattctatgaagcacatacactcttgggtttagt 10185616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 42508442 - 42508382
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttt 87  Q
    ||||||| |||||| ||||| ||||||  ||||||||||  ||||||||||||||||||||    
T  42508442 caagtgggcggttgaattggtcccctcgaattagtcggttattagattagataccgagttt 42508382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 5609289 - 5609202
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||| |||||||||||| |||||   |||||||||||| ||||||  |||||| ||||||||| | ||| |||  |||||||||||||    
T  5609289 tgctctggctttaaatggggcccccgcaagtggacggtgggattgatcccctcggattagtcgattcttggatcggataccgagtttt 5609202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 23639760 - 23639822
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttttt 89  Q
    |||||||||||| ||||||| |||||| ||||||||| | ||| |||  ||||||||||||||    
T  23639760 caagtggacggtgggattggtcccctcggattagtcgattcttggatcggataccgagttttt 23639822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 23645418 - 23645480
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttttt 89  Q
    |||||||||||| ||||||| |||||| ||||||||| | ||| |||  ||||||||||||||    
T  23645418 caagtggacggtgggattggtcccctcggattagtcgattcttggatcggataccgagttttt 23645480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 24273358 - 24273418
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttt 87  Q
    |||||||  ||| ||||||  ||| |||||||||||||||||| ||| |||||||||||||    
T  24273358 caagtgggtggtaggattgatcccatcagattagtcggtccttggatcagataccgagttt 24273418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 36131570 - 36131510
Alignment:
Q  28 aagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||||| |||| ||||||| |||||| ||||||||| |  |||||| ||||||||||||||    
T  36131570 aagtgggcggtgggattggtcccctcggattagtcgattattagatcagataccgagtttt 36131510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 43963951 - 43963866
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtt 86  Q
    |||||||| |||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||||| |  | |||||||||||    
T  43963951 tgctttggttttaaatgagccccatgcaagtggacggtgggattggacccctcagattagttggtccttgggctggataccgagtt 43963866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 26176284 - 26176206
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagatac 80  Q
    |||||||| |||||||| |||||   |||||||||||| ||||||||||| ||||||||||||||||||||  |||||||    
T  26176284 tgctttggatttaaatg-ggcccccgcaagtggacggtgggattggacccttcagattagtcggtccttaggctagatac 26176206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 8192413 - 8192352
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||||| |||| ||||||| |||||| ||||||||||||||| |||  |||||||||||||    
T  8192413 caagtgggcggtgggattgggcccctcggattagtcggtccttggatcggataccgagtttt 8192352  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 14486961 - 14487022
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||||| |||| ||||||| |||||| ||||||||||||||| |||  |||||||||||||    
T  14486961 caagtgggcggtgggattggtcccctcggattagtcggtccttggatcggataccgagtttt 14487022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 31778141 - 31778229
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttttt 89  Q
    |||| |||||||||||| |||||   ||||||||||||  |||||| || |||||||||||| || ||| |||  ||||||||||||||    
T  31778141 tgctctggctttaaatggggcccccgcaagtggacggtgagattggtcctctcagattagtcagttcttggatcggataccgagttttt 31778229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 35943797 - 35943861
Alignment:
Q  4 tttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtcct 68  Q
    |||||||||||||   |||| | |||||||||||| |||||||||||||| ||||||| ||||||    
T  35943797 tttggctttaaattgagcccctgcaagtggacggtgggattggacccctcggattagttggtcct 35943861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 15038069 - 15038156
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||||||||||||| |  ||||   ||||||| |||| ||||||| |||||||||||||||| | ||| |||  |||||||||||||    
T  15038069 tgctttggctttaaacggagcccccgcaagtgggcggtgggattggtcccctcagattagtcgattcttggatcggataccgagtttt 15038156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 41329952 - 41330039
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||| |||||||||||| |||||   ||||||| ||||  |||||| |||||||||||||||||| ||| ||   |||||||||||||    
T  41329952 tgctctggctttaaatggggcccccacaagtgggcggtgagattggtcccctcagattagtcggttcttggaccggataccgagtttt 41330039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 6006951 - 6006889
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttttt 89  Q
    ||||||||||||  |||||| | |||||||||||||| |||||  || |||||||||||||||    
T  6006951 caagtggacggtgtgattggtctcctcagattagtcgatccttgaatcagataccgagttttt 6006889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 6714356 - 6714294
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttttt 89  Q
    ||||||||||||  |||||| ||||||| |||||||| | ||| |||| ||||||||||||||    
T  6714356 caagtggacggtgagattggtcccctcaaattagtcgattcttggattggataccgagttttt 6714294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 7250339 - 7250420
Alignment:
Q  6 tggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||||||||||| |||||  | |||||||| || |||||||||||||| |||||||| |||||| |   ||||||||||||||    
T  7250339 tggctttaaatg-ggccccctaaagtggacagtgggattggacccctcggattagtccgtccttgggccagataccgagtttt 7250420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 9946676 - 9946722
Alignment:
Q  42 attggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||| |||| ||| |||||||||||||||||| ||||||||||||||    
T  9946676 attgaacccatcaaattagtcggtccttagatcagataccgagtttt 9946722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 714165 - 714125
Alignment:
Q  48 cccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||||||||||||||| | |||||||| |||||||||||||    
T  714165 cccctcagattagtcgattcttagattggataccgagtttt 714125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 13747560 - 13747500
Alignment:
Q  28 aagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||||||||| ||||||| ||||||||||| |||| ||||| |||  |||||||| ||||    
T  13747560 aagtggacggtgggattgggcccctcagatttgtcgatccttggatcggataccgaatttt 13747500  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 35123652 - 35123588
Alignment:
Q  192 atgtaactttgaaggttgagtattttgatttatgaatggttaattctatgaagcacatacattct 256  Q
    |||||||||||||| | ||||||||| ||||||  |||   |||| |||||||||||||||||||    
T  35123652 atgtaactttgaagatagagtattttaatttatttatgtaaaattttatgaagcacatacattct 35123588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 4603892 - 4603974
Alignment:
Q  6 tggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||||||||| | ||||| | |||||||||||| ||||||| |||||| ||||||||||||||| |||  |||||||||||||    
T  4603892 tggctttaaacggggcccctgcaagtggacggtgggattggtcccctcggattagtcggtccttggatcggataccgagtttt 4603974  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 32059527 - 32059440
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||| |||||||||| | |||||   ||||||| |||| ||||||| |||||| ||||||||||||||| |||  |||||||||||||    
T  32059527 tgctctggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcggtccttggatcggataccgagtttt 32059440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 10837446 - 10837493
Alignment:
Q  41 gattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||||| |||||||||||||| |||||||||||  |||||||||||||    
T  10837446 gattggtcccctcagattagttggtccttagatcggataccgagtttt 10837493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 15485373 - 15485290
Alignment:
Q  6 tggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttttt 89  Q
    |||||||||||| || ||   |||||||| ||| |||||||||||||| ||||||||||  ||||| || ||||| ||||||||    
T  15485373 tggctttaaatggggtccccgcaagtggatggtgggattggacccctcggattagtcggctcttaggttggatacagagttttt 15485290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 18207322 - 18207404
Alignment:
Q  6 tggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||||||||| |||||||   ||||||| |||| ||||||| |||||| ||||||||| | ||| |||  |||||||||||||    
T  18207322 tggctttaaacgaggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagtttt 18207404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 31206379 - 31206421
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtcctt 69  Q
    |||||||||||| ||||||||| |||| |||||||||||||||    
T  31206379 caagtggacggtgggattggactcctcggattagtcggtcctt 31206421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 16247062 - 16247025
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcgg 64  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  16247062 caagtggacggtgggattggacccctcggattagtcgg 16247025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 23016764 - 23016719
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttaga 72  Q
    ||||||||||||  ||||||||||||| ||||||| ||||||||||    
T  23016764 caagtggacggtgagattggacccctcggattagtaggtccttaga 23016719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 48977498 - 48977585
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||| |||||||||| | ||||| | ||||||| |||| ||||||| |||||| ||||||||||||||| |||  |||||||||||||    
T  48977498 tgctctggctttaaacggggcccctgcaagtgggcggtgggattggtcccctcggattagtcggtccttggatcggataccgagtttt 48977585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 50731298 - 50731237
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||||| |||| ||||||| |||||||||||||||| ||||| |||  |||||||||||||    
T  50731298 caagtgggcggtgggattggtcccctcagattagtcgatccttggatcggataccgagtttt 50731237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 50781556 - 50781617
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||||| |||| ||||||| |||||||||||||||| ||||| |||  |||||||||||||    
T  50781556 caagtgggcggtgggattggtcccctcagattagtcgatccttggatcggataccgagtttt 50781617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 7195956 - 7196004
Alignment:
Q  40 ggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||||| |||||||||||||||| | ||| ||||||||||||||||||    
T  7195956 ggattggtcccctcagattagtcgattctttgattagataccgagtttt 7196004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 34844488 - 34844555
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtcctt 69  Q
    |||| |||||||||||| |||||   |||||||| ||| |||||||||||||| |||||||||||||||    
T  34844488 tgctatggctttaaatg-ggcccccgcaagtggatggtgggattggacccctcggattagtcggtcctt 34844555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 10083906 - 10083819
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||| |||||||||| | |||||   |||||||||||| ||||||| |||||| ||||||||| | ||| |||  |||||||||||||    
T  10083906 tgctctggctttaaacggggcccccacaagtggacggtgggattggtcccctcggattagtcgattcttggatcggataccgagtttt 10083819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 10190829 - 10190742
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||| |||||||||| | |||||   |||||||||||| ||||||| |||||| ||||||||| | ||| |||  |||||||||||||    
T  10190829 tgctctggctttaaacggggcccccgcaagtggacggtgggattggtcccctcggattagtcgattcttggatcggataccgagtttt 10190742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 26599450 - 26599489
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtc 66  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  26599450 caagtggacggtgggattggacccctcagattggtcggtc 26599489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 53167724 - 53167681
Alignment:
Q  29 agtggacggttggattggacccctcagattagtcggtccttaga 72  Q
    |||||||||| ||||||| |||||| ||||||||||||||||||    
T  53167724 agtggacggtgggattgggcccctcggattagtcggtccttaga 53167681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 3869845 - 3869887
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtcctt 69  Q
    ||||| ||| || ||||||||||||||||||||||||||||||    
T  3869845 caagttgacagtgggattggacccctcagattagtcggtcctt 3869887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 10538187 - 10538126
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttttt 89  Q
    ||||||||| || ||||||||||||||| |||||||||| |||||  | ||||||||||||||    
T  10538187 caagtggacagtgggattggacccctcaaattagtcggt-cttaggctggataccgagttttt 10538126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 10682876 - 10682815
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttttt 89  Q
    ||||||||| || ||||||||||||||| |||||||||| |||||  | ||||||||||||||    
T  10682876 caagtggacagtgggattggacccctcaaattagtcggt-cttaggctggataccgagttttt 10682815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 40302703 - 40302665
Alignment:
Q  31 tggacggttggattggacccctcagattagtcggtcctt 69  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  40302703 tggacggtgggattggacccctcaaattagtcggtcctt 40302665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 51532925 - 51532963
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggt 65  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  51532925 caagtggacggtgggattggtcccctcagattagtcggt 51532963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 15566561 - 15566500
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||||| |||| ||||||| |||||||||||||||| | ||| |||  |||||||||||||    
T  15566561 caagtgggcggtgggattggtcccctcagattagtcgattcttggatcggataccgagtttt 15566500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 49030043 - 49030099
Alignment:
Q  31 tggacggttggattggacccctcagattagtcggtccttagattagataccgagttt 87  Q
    ||||||||  |||||| || |||||||||||||||||||| || | |||||||||||    
T  49030043 tggacggtgagattggtcctctcagattagtcggtccttatatcatataccgagttt 49030099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 5967 - 6028
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||||||||||| ||||||| | |||||||||||||||||||| ||||||||| ||| ||||    
T  5967 caagtggacggtgggattggtcacctcagattagtcggtccttggattagatatcgaatttt 6028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 12211596 - 12211535
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||||| |||| ||||||| |||||| |||||||||||||||  |||||||||||||||||    
T  12211596 caagtgggcggtaggattgggcccctctgattagtcggtccttgaattagataccgagtttt 12211535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 674496 - 674451
Alignment:
Q  28 aagtggacggttggattggacccctcagattagtcggtccttagat 73  Q
    ||||||||||| ||||||  ||||||||||||||||||||||||||    
T  674496 aagtggacggtgggattgatcccctcagattagtcggtccttagat 674451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 38373041 - 38372980
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||||||||||| |||||||||||||  ||||||||||||||| | | |||||| |||||||    
T  38373041 caagtggacggtgggattggaccccttggattagtcggtccttgggtcagatactgagtttt 38372980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 11910034 - 11909954
Alignment:
Q  8 gctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||||||| ||||||| | |||||||||||| ||||||| || |||  |||||||| |||||  |||||||| ||||||||    
T  11910034 gctttaaacgaggcccctacaagtggacggtgggattggtcctctcgaattagtcgatccttgaattagatatcgagtttt 11909954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 27009501 - 27009561
Alignment:
Q  28 aagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||||||||| ||||||| ||||||| |||||||| | ||| |||| |||||||||||||    
T  27009501 aagtggacggtgggattggtcccctcaaattagtcgattcttggattggataccgagtttt 27009561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 42913600 - 42913513
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||| |||||||||| | |||||   |||||||||||| ||||||| |||||| ||||||| | | |||||||  |||||||||||||    
T  42913600 tgctctggctttaaacggggcccccgcaagtggacggtgggattggtcccctcggattagttgattcttagatcggataccgagtttt 42913513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 654766 - 654705
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||||| |||| ||||||| |||||| ||||||||||| ||| |||  |||||||||||||    
T  654766 caagtgggcggtgggattggtcccctcggattagtcggttcttggatcggataccgagtttt 654705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 2344447 - 2344500
Alignment:
Q  35 cggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||| ||||||| |||||| ||||||||||||||| |||  |||||||||||||    
T  2344447 cggtgggattggtcccctcggattagtcggtccttggatcggataccgagtttt 2344500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 27312292 - 27312353
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||||| |||| ||||||| |||||||||||||||| | ||| |||  |||||||||||||    
T  27312292 caagtgggcggtgggattggtcccctcagattagtcgattcttggatcggataccgagtttt 27312353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 17279676 - 17279732
Alignment:
Q  32 ggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||||| ||||||| ||||||| ||||||||||| || |||  |||||||||||||    
T  17279676 ggacggtgggattggtcccctcaaattagtcggtctttggatcggataccgagtttt 17279732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 23636652 - 23636584
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtcctt 69  Q
    |||| |||||||||||| |||||   ||||| |||||| |||||||||  ||| |||||||||||||||    
T  23636652 tgctctggctttaaatggggccctcacaagtagacggtgggattggacttctcggattagtcggtcctt 23636584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 17149543 - 17149458
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtt 86  Q
    ||||||||||||||||| |||||   |||||| ||||| ||||||| ||||||  ||||||||||||||  || ||||||||||||    
T  17149543 tgctttggctttaaatggggcccccgcaagtgaacggtgggattggtcccctcgaattagtcggtccttgaatcagataccgagtt 17149458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 9239085 - 9239171
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttt 87  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||| |||||| ||||||||| | ||| |||  ||||||||||||    
T  9239085 tgctttggctttaaatggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 9239171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 9208362 - 9208449
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||||||||||||||| |||||   ||||||| |||| ||||||| | ||||||| |||||| | ||| ||| | ||||||||||||    
T  9208362 tgctttggctttaaatggggcccccgcaagtgggcggtgggattggtctcctcagaatagtcgattcttggatcaaataccgagtttt 9208449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 28672203 - 28672265
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttttt 89  Q
    ||||||| |||| ||||||| |||||| ||||||||| | ||| ||| |||||||||||||||    
T  28672203 caagtgggcggtgggattggtcccctcggattagtcgattcttggatcagataccgagttttt 28672265  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 6383962 - 6383893
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggatt-ggacccctcagattagtcggtcctt 69  Q
    ||||||||||||||||| | |||   ||||||||| || ||||| |||||||||||||||||| ||||||    
T  6383962 tgctttggctttaaatgggacccccacaagtggacagtgggatttggacccctcagattagtcagtcctt 6383893  T

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Target: scaffold0049 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 66864 - 66951
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||| |||||||||| | |||||   ||||||| |||| ||||||| |||||| ||||||||||||||| |||  |||||||||||||    
T  66864 tgctctggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcggtccttggatcggataccgagtttt 66951  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 9126549 - 9126482
Alignment:
Q  2 gctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtcctt 69  Q
    |||||||||||||||| |  || | ||||| |||||| |||||||| |||||||||||||||||||||    
T  9126549 gctttggctttaaatgggaaccctgcaagtagacggtgggattggatccctcagattagtcggtcctt 9126482  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 34694634 - 34694575
Alignment:
Q  29 agtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||||||||| ||||||| ||||||||||||||| |||||| |||  |||| ||||||||    
T  34694634 agtggacggtgggattggtcccctcagattagtctgtccttggatcggataacgagtttt 34694575  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 28193588 - 28193674
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttt 87  Q
    |||| |||||||||| | ||||| | ||||||| |||| ||||||| |||||| ||||||||| | ||| |||  ||||||||||||    
T  28193588 tgctctggctttaaacggggcccctacaagtgggcggtgggattggtcccctcggattagtcgattcttggatcggataccgagttt 28193674  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 2166836 - 2166897
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||||| |||| ||||||| |||||||||||||||| |  || |||| |||||||||||||    
T  2166836 caagtgggcggtgggattggtcccctcagattagtcgattttttgattggataccgagtttt 2166897  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 32879419 - 32879480
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||||| |||| ||||||| |||||| ||||||||| | ||| |||| |||||||||||||    
T  32879419 caagtgggcggtgggattggtcccctcggattagtcgattcttggattggataccgagtttt 32879480  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 4584980 - 4585028
Alignment:
Q  40 ggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||||||||||||| |||| ||||||  |||| |||||||||||||||    
T  4584980 ggattggacccctcaaattaatcggtcactagactagataccgagtttt 4585028  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 1486556 - 1486618
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttttt 89  Q
    |||||||||||| |||| || |||||| ||||||||||||||| |||  ||||||||||||||    
T  1486556 caagtggacggtgggatcggtcccctccgattagtcggtccttggatcggataccgagttttt 1486618  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 20999245 - 20999185
Alignment:
Q  6 tggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtc 66  Q
    ||||||||||| |||| |  ||||||||||||| | |||||||||||| ||||||||||||    
T  20999245 tggctttaaataaggctccctcaagtggacggtggtattggacccctcggattagtcggtc 20999185  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30677286 - 30677350
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggt 65  Q
    ||||||||||||||||| | |||   ||||||| |||| ||||||| ||||||||||||||||||    
T  30677286 tgctttggctttaaatgggacccccgcaagtgggcggtgggattggtcccctcagattagtcggt 30677350  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 37351514 - 37351454
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttt 87  Q
    ||||||| |||| ||||||| |||||| ||||||||||||||| |||  ||||||||||||    
T  37351514 caagtgggcggtgggattggtcccctcggattagtcggtccttggatcggataccgagttt 37351454  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 1379033 - 1379095
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttttt 89  Q
    ||||||||||||  |||||| |||||||||||||||| | |||||||  ||||||||| ||||    
T  1379033 caagtggacggtgagattggtcccctcagattagtcgattcttagatcggataccgagctttt 1379095  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 34778449 - 34778535
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttt 87  Q
    ||||||||||||||| | |||||   |||||||||||| ||||||| |||||  ||||||||| | ||| |||  ||||||||||||    
T  34778449 tgctttggctttaaacggggcccccgcaagtggacggtgggattggtccccttggattagtcgattcttggatcggataccgagttt 34778535  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 52135262 - 52135324
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttttt 89  Q
    |||||||||||| ||||||| ||||||| |||||||||| ||| |||  ||||| ||||||||    
T  52135262 caagtggacggtgggattggtcccctcatattagtcggttcttggatcggatactgagttttt 52135324  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 27159221 - 27159282
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||||||||||| ||||||| |||||||||||||||| || || |||  |||| ||||||||    
T  27159221 caagtggacggtgggattggtcccctcagattagtcgatctttggatcggatatcgagtttt 27159282  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 37047109 - 37047170
Alignment:
Q  8 gctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtcctt 69  Q
    |||||||||| |||||   |||||||||||| |||||||||||||  |||||||||| ||||    
T  37047109 gctttaaatggggcccccacaagtggacggtgggattggacccctaggattagtcggccctt 37047170  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 39714711 - 39714650
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||||||| ||| ||||||||| |||| ||||||||||||||| |  | |||||||||||||    
T  39714711 caagtggatggtgggattggactcctcggattagtcggtccttgggctggataccgagtttt 39714650  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 161919 - 162006
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||| ||||||| |||| |||||   ||||||| |||| ||||||| |||||| ||||||||| | ||| ||| ||||||||||||||    
T  161919 tgctctggcttttaatggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcagataccgagtttt 162006  T

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Target: scaffold0102 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 39207 - 39289
Alignment:
Q  6 tggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    |||||||||| | |||||   ||||||| |||| ||||||| |||||| ||||||||| | ||| ||| ||||||||||||||    
T  39207 tggctttaaacggggcccccgcaagtgggcggtgggattggtcccctcggattagtcgattcttggatcagataccgagtttt 39289  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 72587 - 72545
Alignment:
Q  27 caagtggacggttggattggacccctcagattagtcggtcctt 69  Q
    |||||| ||||| |||||||||||||||||| |||||||||||    
T  72587 caagtgaacggtgggattggacccctcagatgagtcggtcctt 72545  T

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Target: scaffold0160 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 29200 - 29143
Alignment:
Q  31 tggacggttggattggacccctcagattagtcggtccttagattagataccgagtttt 88  Q
    ||||| || ||||||| ||||||||||||||| |||||| |||  |||||||||||||    
T  29200 tggacagtgggattggtcccctcagattagtcagtccttggatcggataccgagtttt 29143  T

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Target: scaffold0623 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 1143 - 1056
Alignment:
Q  1 tgctttggctttaaatgaggcccattcaagtggacggttggattggacccctcagattagtcggtccttagattagataccgagttttt 89  Q
    |||| |||||||||||| |||||   |||||||||||| ||||||| ||||||  |||||||| | ||| |||  ||||||||||||||    
T  1143 tgctctggctttaaatggggcccccgcaagtggacggtgggattggtcccctcgaattagtcgattctt-gatcggataccgagttttt 1056  T

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