View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_19 (Length: 464)
Name: NF18406_low_19
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 61 - 445
Target Start/End: Complemental strand, 12266391 - 12266009
Alignment:
| Q |
61 |
ttaatttcttatacgaagtttcacataacataaaaattaattatttaatattgttgcaagtcgtcaacttgaatcaagcaatcaatgtcagcatatgcat |
160 |
Q |
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| T |
12266391 |
ttaatttcttatacgaagtttcacataacataaaaattaattatttaatattgttgcaagtcgtcaacatgaatcaagcaatcaatgtcagcatatgcat |
12266292 |
T |
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| Q |
161 |
tccgcgagcacctatnnnnnnnnntacacaagtaaatatctctatacataaaatgaacttgagtcattcttgaactaaaatataagaaaattgaaccaaa |
260 |
Q |
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| T |
12266291 |
tccgcgagcacctataaaaaaaaatacacaagtaaatatct--atacataaaattaacttgagtcattcttgaactaaaatataagaaaattgaaccaaa |
12266194 |
T |
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| Q |
261 |
tagacatagtacagtttttgtttataattaattaagttaggaaaataaaaaatgaagaaagagtaaaagtatgaataccttgttaaatcattacatcaaa |
360 |
Q |
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| T |
12266193 |
tagacatagtacagtttttgtttataattaattaagttaggaaaataaaaaatgaagaaagagtaaaagtatgaataccttgttaaatcattacatcaaa |
12266094 |
T |
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| Q |
361 |
caatgctcaaaacaaccttccaagcaattatcaaaaccagcacatgttacaagacactctgcacgacaagcaaaacgctctatag |
445 |
Q |
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| T |
12266093 |
caatgctcaaaacaaccttccaagcaattatcaaaaccagcacatgttataagacactctgcacgacaagcaaaacgctctatag |
12266009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 12266436 - 12266404
Alignment:
| Q |
35 |
tagcaaatggacattttaaattaaaattaattt |
67 |
Q |
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| T |
12266436 |
tagcaaatggacattttaaattaaaattaattt |
12266404 |
T |
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