View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_20 (Length: 461)
Name: NF18406_low_20
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 14 - 425
Target Start/End: Complemental strand, 37662204 - 37661793
Alignment:
| Q |
14 |
agagggagtgaggtgtttttgatagcagaatctttgatggcaaagaaagttgagtttttaggtggaagaaagaatggtggtgaacgatgaagaagatcag |
113 |
Q |
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| T |
37662204 |
agagggagtgaggtgtttttgatagcagaatctttgatggcaaagaaagttgagtttttaggtggaagaaagaatggtggtgaacgatgaagaagatcag |
37662105 |
T |
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| Q |
114 |
ccataagaacaaaaccttgttttttgagtgcttctgttgcgtttgttgagagtgtgtgagtttgtggagggatttcttgaggggaggatttggaatttga |
213 |
Q |
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| T |
37662104 |
ccataagaacaaaaccttgttttttgagtgcttctgttgcgtttgttgagagtgtgtgagtttgtgatgggattacttcaggcgaggatttggaatttga |
37662005 |
T |
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| Q |
214 |
gtgtattgctgaagtgattgctatgacaccaagtgctacagatgctatgaagtagattggaaaccaacaccaacatgaatatgatgaagccatgtttgag |
313 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37662004 |
gtgtattgctgaggtgatagctatgacaccaagtgctacagatgctatgaagtagattggaaaccaacaccaacatgaatatgatgaagccatgtttgag |
37661905 |
T |
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| Q |
314 |
ttttgatgaatgtagagattgattgtgtcttgcagaacaagaaaaagatgatgaaagaatggttctttttggaaggaaaaggagaaagcagtggaaagaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37661904 |
ttttgatgaatgtagagattgattgtgtcttgcagaacaagaaaaagatgatgaaagaatggttctttttggaaggaaaaggagaaagcagtggaaagaa |
37661805 |
T |
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| Q |
414 |
tagttttatttc |
425 |
Q |
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| T |
37661804 |
tagttttatttc |
37661793 |
T |
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