View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_21 (Length: 461)
Name: NF18406_low_21
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 28829011 - 28828608
Alignment:
| Q |
1 |
tcttccaccttacaactcaataacaacagattcattacctcagaaaactgctatgaactctgatagtggtctcacctataatgttcctccattaagaaaa |
100 |
Q |
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| T |
28829011 |
tcttccaccttacaactcaataacaaccgattcattacctcagaaaactgctatgaactctgatagtggtctcacctataatgttcctccattaagaaaa |
28828912 |
T |
|
| Q |
101 |
cgttctagagattctagagactattctaattccatcaattttccttacccaaattcctatatgtctccttcaacaccacaacaacaaaacaatcatagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28828911 |
cgttctagagattctagagactattctaattccatcaattttccttacccaaattcctatatttctccttcaacaccacaacaacaaaacaatcatagaa |
28828812 |
T |
|
| Q |
201 |
gttgtgnnnnnnnnnnnnnnnnnnnnnnnggtgaagatatttctcttcagatccaaagacaacaacttgatattgatcaactcatttctcaacaagtaag |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28828811 |
gttgtgcttcttcttctttctcttttcttggtgaagatatttctcttcagatccaaagacaacaacttgatattgatcaactcatttctcaacaagtaag |
28828712 |
T |
|
| Q |
301 |
tccaatttcaagaatttaacttttttatttcaatttagagtataaatctctaatgggttatctaatgggtaataacccattaatatgttcttat-aaaaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||| ||||| |
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| T |
28828711 |
tccaatttcaagaatttaacttttttatttcaatttagagtataaatctctaatgggtcatc---------attacccattaatatgttcttataaaaaa |
28828621 |
T |
|
| Q |
400 |
attcatttttatg |
412 |
Q |
| |
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||||||||||||| |
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| T |
28828620 |
attcatttttatg |
28828608 |
T |
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