View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_22 (Length: 461)
Name: NF18406_low_22
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Complemental strand, 30994997 - 30994563
Alignment:
| Q |
11 |
cataggttctgatcatgaccataatcatggtccttcttttggtttaaacatgtttggtttatacgcctatgacactgtttatgttcttgcttctgcacta |
110 |
Q |
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| T |
30994997 |
cataggttctgatcatgaccataatcatgggccttcttttggtttaaacatgtttggtttatacgcctatgacactgtttatgttcttgcttctgcacta |
30994898 |
T |
|
| Q |
111 |
gatgcattttttaacagtggaggaactttgtcattttcaaatgattcaaatctaaacatgttaagaggagacacccttcatttggataatataaaggtct |
210 |
Q |
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| T |
30994897 |
gatgcattttttaacagtggaggaactttgtcattttcaaatgattcaaatctaaacatgttaagaggagacacccttcatttggataatatgaaggtct |
30994798 |
T |
|
| Q |
211 |
ttgttaatggtagtatgttgcttcaaaaaatcttagaggtcaacataactggtttaacaggcaatattatgtttgatccaaatggaaacttaatgaatcc |
310 |
Q |
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| T |
30994797 |
ttgttaatggtagtatgttgcttcaaaaaatcttagaggtcaacataactggtttaacaggcaatattatgtttgattcaaatggaaacttaatgaatcc |
30994698 |
T |
|
| Q |
311 |
atcatatgaaatcattaatgtcataggtagtggaattagaaggattggtttttggtctgaatcttatggactccacactggtgtggaatctcctaatcat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30994697 |
atcatatgaaatcattaatgtcataggtagtggaattagaaggattggtttttggtctgaatcttatggactccacactggtgtggaatctcctaatcat |
30994598 |
T |
|
| Q |
411 |
tcaaatttaagaaaagaattatatggtgtcatatg |
445 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
30994597 |
tcaaatttaagaaaaggattatatggtgtcatatg |
30994563 |
T |
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