View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18406_low_23 (Length: 456)
Name: NF18406_low_23
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 44306987 - 44306588
Alignment:
| Q |
18 |
acttagggagggtgtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctgga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44306987 |
acttagggagggtgtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctgga |
44306888 |
T |
|
| Q |
118 |
agtattgatgcgccatttgttgcaaaggctttcacaaataatcttaacaggagtgacttattaacttatctaagaatctatcagggtgttattaagaagg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44306887 |
agtattgatgcgccatttgttgcaaaggctttcacaaataatcttaacaggagtgacttattaacttatctaagaatctatcagggtgttattaagaagg |
44306788 |
T |
|
| Q |
218 |
atgattttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagctcatgc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44306787 |
atgattttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgttgatgaagctcatgc |
44306688 |
T |
|
| Q |
318 |
tggagaaattgttatgttgttcgatgctcttcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgttcctact |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44306687 |
tggagaaattgttatgttgttcgatgctcttcttaaatctggagatacttttactgatgggtctgttagatatacaatgacttctgccgatgttcctact |
44306588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 43896533 - 43896137
Alignment:
| Q |
18 |
acttagggagggtgtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctgga |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||| ||||||||||||| |||||||||||||| |
|
|
| T |
43896533 |
acttatggagggtgtaattaggtatttgccgggtccaatcgatgttagtaattatgctcttgatcaaaataggaatggtgagaaagttgaattgtctgga |
43896434 |
T |
|
| Q |
118 |
agtattgatgcgccatttgttgcaaaggctttcacaaataatcttaacaggagtgacttattaacttatctaagaatctatcagggtgttattaagaagg |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||| ||| | || ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43896433 |
agcattgatgcgccatttgttgcaaaggttttcacaaatgtgattaggaatgatggattagtaacttatctaagaatctatcagggtgttattaagaagg |
43896334 |
T |
|
| Q |
218 |
atgattttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagctcatgc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| | |||| |||||||||||||||| |||||||| | | ||||||||||||||| |
|
|
| T |
43896333 |
gtgattttattacaaatgttaacactggtaagaagattcagattcctcgtttgtttaagagacatgatgataagattgaggaagttgatgaagctcatgc |
43896234 |
T |
|
| Q |
318 |
tggagaaattgttatgttgttcgatgctcttcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgttcct |
414 |
Q |
| |
|
|||||| ||| |||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43896233 |
tggagagattattattgtgttagatgctattcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgccgatgttcct |
43896137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 44301881 - 44301480
Alignment:
| Q |
18 |
acttagggagggtgtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctgga |
117 |
Q |
| |
|
||||| ||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
44301881 |
acttatggaggatgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaagttgaattgtctgga |
44301782 |
T |
|
| Q |
118 |
agtattgatgcgccatttgttgcaaaggctttcacaaataatcttaacaggagtga------cttattaacttatctaagaatctatcagggtgttatta |
211 |
Q |
| |
|
||| |||||||||||||||| ||||||| |||||||||| | | ||||||| ||| ||||||| |||||||||||||||||||||||| | |
|
|
| T |
44301781 |
agtgttgatgcgccatttgtagcaaaggttttcacaaatt---tgtattggagtgatggattctt-ttaacttgtctaagaatctatcagggtgttatca |
44301686 |
T |
|
| Q |
212 |
agaaggatgattttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagc |
311 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
44301685 |
agaagggtgattttattacaaatgttaacactggtgagaagattcagatttatagcttgtctaagagacatgatgatgtgattgagtttgttgatgaagc |
44301586 |
T |
|
| Q |
312 |
tcatgctggagaaattgttatgttgttcgatgctcttcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgtt |
411 |
Q |
| |
|
|||||| |||||||||||||| |||| | | | |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
44301585 |
tcatgccggagaaattgttattgtgttagctattgttcttaaatctggagatacttttactgatgggtctgttagatatacaatgtcttctgccgatgtt |
44301486 |
T |
|
| Q |
412 |
cctact |
417 |
Q |
| |
|
|||||| |
|
|
| T |
44301485 |
cctact |
44301480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 31 - 412
Target Start/End: Complemental strand, 44312753 - 44312372
Alignment:
| Q |
31 |
gtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgcgc |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| || |
|
|
| T |
44312753 |
gtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaagttgaattgtctggaagtgttgatgagc |
44312654 |
T |
|
| Q |
131 |
catttgttgcaaaggctttcacaaataatcttaacaggagtgacttattaacttatctaagaatctatcagggtgttattaagaaggatgattttattac |
230 |
Q |
| |
|
||||||| ||||||| ||||||||||| || | || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44312653 |
catttgtagcaaaggttttcacaaatatgtataggattaggtacttattaacttatctaagaatctatcagggtgttattaagaagggtgattttattac |
44312554 |
T |
|
| Q |
231 |
aaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagctcatgctggagaaattgtt |
330 |
Q |
| |
|
||| |||||||||||| |||||||| |||||| | ||| ||||||||||| ||| | ||||| || | | |||||||||||||||||||||||||||| |
|
|
| T |
44312553 |
aaacgttaacactggtaagaagattaagattccttgtttgggtaagagacattatggtaagattaaggaagttgatgaagctcatgctggagaaattgtt |
44312454 |
T |
|
| Q |
331 |
atgttgttcgatgctcttcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgttc |
412 |
Q |
| |
|
| |||| | |||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
44312453 |
tttgtgtttggtgctattcttagatctggagatacttttactgatgggtctgttagatatataatgacttctgccgatgttc |
44312372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 403
Target Start/End: Complemental strand, 43895669 - 43895619
Alignment:
| Q |
353 |
aatctggagatactttcactgatgggtctgttagatatacaatgacttctg |
403 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
43895669 |
aatctggagatacttttgctgatgggtctgttagatattcaatgacctctg |
43895619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 403
Target Start/End: Complemental strand, 44306093 - 44306043
Alignment:
| Q |
353 |
aatctggagatactttcactgatgggtctgttagatatacaatgacttctg |
403 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||| ||||||| |||| |
|
|
| T |
44306093 |
aatctggagatacttttgctgatgggtccgttagatattcaatgacctctg |
44306043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 24 - 414
Target Start/End: Complemental strand, 18702135 - 18701741
Alignment:
| Q |
24 |
ggagggtgtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtatt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18702135 |
ggagggtgtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatctaaataagaatggtgagaaagttgaattgtctggaagtatt |
18702036 |
T |
|
| Q |
124 |
gatgcgccatttgttgcaaaggctttcacaaataatcttaacaggagtgacttattaacttatctaagaatctatcagggtgttattaagaaggatgatt |
223 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| | | | ||| | | ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18702035 |
gatgcaccatttgttgcaaaggcttttgcaaattggcatgagaggtatttcaaattaacttatctaagaatctatcagggtgttattaagaagggtgatt |
18701936 |
T |
|
| Q |
224 |
ttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagac-atgatgatgagattgagtatgctgatgaagctcatgctggag |
322 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| | ||| | ||||||| | | | || | || ||| | | |||||||||||||||||||| |
|
|
| T |
18701935 |
ttattacaaatgttaacactggtaagaagattcagattcctcgtttgggcaagagacgaagttaataaaatcgaggaagttgatgaagctcatgctggag |
18701836 |
T |
|
| Q |
323 |
aaattgttatgttgttcgatgctcttcttaaatctggagatactttcactg---atgggtctgttagatatacaatgacttctgcagatgttcct |
414 |
Q |
| |
|
|||||||| | | || ||||||| |||| |||||||||||||||| || | ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18701835 |
aaattgtttttgtttttgatgctcatcttgaatctggagatacttttaccgccaatgggtctgttagatatacaatgacttctgctgatgttcct |
18701741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 24 - 414
Target Start/End: Complemental strand, 4084645 - 4084249
Alignment:
| Q |
24 |
ggagggtgtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtatt |
123 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||| ||||||||| |||||||||| |
|
|
| T |
4084645 |
ggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcatgatcaaaataggaatggtgagaaagttgaattgtttggaagtatt |
4084546 |
T |
|
| Q |
124 |
gatgcgccatttgttgcaaaggctttcacaaataatcttaacaggagtgacttattaacttatctaagaatctatcagggtgttattaagaaggatgatt |
223 |
Q |
| |
|
||||| |||||||||| ||||||||||||| || | || | | ||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
4084545 |
gatgcaccatttgttggaaaggctttcacatattggcataggccgtttttaaaattaacttatctaagaatctatcagggtgttatcaagaagggtgatt |
4084446 |
T |
|
| Q |
224 |
ttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatgatgatgagattgagtatgctgatgaagctcatgctggaga |
323 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| |||||| | |||| ||||||||||||| || |||| || | ||||||||||||||||||||| |
|
|
| T |
4084445 |
ttattacaaatgttaacaccggtaagaagattaagattcctcgtttgtttaagagacatgataatacgattaaggcagttgatgaagctcatgctggaga |
4084346 |
T |
|
| Q |
324 |
aattgtta---tgtt---gttcgatgctcttcttaaatctggagatactttcactgatgggtctgttagatatacaatgacttctgcagatgttcct |
414 |
Q |
| |
|
| |||||| |||| ||| |||||| |||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
4084345 |
acttgttattgtgttaaagtttgatgctattcttaaatctggagatacttttactgacgggtctattagatatacaatgacttctgccgatgttcct |
4084249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 24 - 404
Target Start/End: Original strand, 8158829 - 8159230
Alignment:
| Q |
24 |
ggagggtgtaattaggtatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtatt |
123 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |||||| |||||| |||||||||||||||||||| |
|
|
| T |
8158829 |
ggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaattgtctggaagtatt |
8158928 |
T |
|
| Q |
124 |
gatgcgccatttgttgcaaaggctttcacaaataatcttaacaggagtgactt---attaacttatctaagaatctatcagggtgttattaagaaggatg |
220 |
Q |
| |
|
||||| ||||||||||||||||||||| || | | | | |||| | || ||||||||| |||||||| |||||||||||||||||||||| || |
|
|
| T |
8158929 |
gatgctccatttgttgcaaaggctttcgtaact--tggt-ataggatgtatttaaaattaacttacctaagaatttatcagggtgttattaagaagggtg |
8159025 |
T |
|
| Q |
221 |
attttattacaaatgttaacactggtgagaagattcagattcttaccttgtgtaagagacatg---atgatgagattgagtatgctg------------- |
304 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||| | ||| ||||||||| || ||||||||| |||| | | || |
|
|
| T |
8159026 |
attttattacaaatgttaacactggtaagaagattgagattcctcgtttgggtaagagacgtgaacatgatgagagtgaggaagttgataaaatcaagga |
8159125 |
T |
|
| Q |
305 |
-----atgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaaatctggagatactttcactgatgggtctgttagatatacaatgact |
399 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| ||||||| |||| |||||||||||||||| || ||||||||||||||||||| ||||||| |
|
|
| T |
8159126 |
agttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataatgact |
8159225 |
T |
|
| Q |
400 |
tctgc |
404 |
Q |
| |
|
||||| |
|
|
| T |
8159226 |
tctgc |
8159230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 35856724 - 35856802
Alignment:
| Q |
177 |
attaacttatctaagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactggtgagaagatt |
255 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| || | ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35856724 |
attaacatatctaagaatctatcagggcgttattagaaaaggggattttattactaatgttaacactggtgagaagatt |
35856802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 35856591 - 35856703
Alignment:
| Q |
40 |
tatttgccaagtccaatcgatgttggtaattatgctcttgatctaaataagaatggtgagaaaattgaattgtctggaagtattgatgcgccatttgttg |
139 |
Q |
| |
|
|||||||| |||||||| ||| | |||||||||||||||||| | || |||||| |||||| | |||||||||||||||||||||| ||| ||||| | |
|
|
| T |
35856591 |
tatttgccgagtccaattgatttgagtaattatgctcttgatcaagctaggaatggagagaaagtagaattgtctggaagtattgatgggccgtttgtcg |
35856690 |
T |
|
| Q |
140 |
caaaggctttcac |
152 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
35856691 |
cattggctttcac |
35856703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 401
Target Start/End: Complemental strand, 15040348 - 15040305
Alignment:
| Q |
358 |
ggagatactttcactgatgggtctgttagatatacaatgacttc |
401 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
15040348 |
ggagatacttttactgatgggtctgttaaatatacaatgacttc |
15040305 |
T |
|
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 10541444 - 10541388
Alignment:
| Q |
189 |
aagaatctatcagggtgttattaagaaggatgattttattacaaatgttaacactgg |
245 |
Q |
| |
|
|||||||||| ||||||| ||| ||||| |||||||||||||||| ||||||||| |
|
|
| T |
10541444 |
aagaatctatgagggtgtcattcggaagggagattttattacaaatgataacactgg |
10541388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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