View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_27 (Length: 430)
Name: NF18406_low_27
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 373
Target Start/End: Original strand, 43329262 - 43329607
Alignment:
| Q |
20 |
gagcagagacaataaaggagaaccaatcacattgatatatagtgccaccttatgcacttaataacatttttataataataaggtctatatccaaggcaag |
119 |
Q |
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| T |
43329262 |
gagcagagacaataaaggagaaccaatcacattgatatatagtgccaccttatgcacttaataacatttttataataataaggtctatatccaaggcaag |
43329361 |
T |
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| Q |
120 |
ctagtgttgaattttgaagttcgtccccgcatgtggttaagatcatttccttgttgtttccaaggtccaattcataatcctagctagctagttgtttata |
219 |
Q |
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| T |
43329362 |
ctagtgttgaattttgaagttcctccccgcatgtggttaagatcatttccttgttgtttccaaggtccaattcataatc----ctagctagttgtttat- |
43329456 |
T |
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| Q |
220 |
ttcattcatatgatccttggagacttattgtagttttatattctaagaaaatcccccaacctaagcaaaacatggattccgtgggaatcaaaatatttct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43329457 |
---attcatatgatccttggagacttattgtagttttatattctaagaaaatccccccacctaagcaaaacatggattccgtgggaatcaaaatatttct |
43329553 |
T |
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| Q |
320 |
taagcatctttaagcgatatagagatccaggctatatgagcatctccaacggac |
373 |
Q |
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| T |
43329554 |
taagcatctttaagcgatatagagatccaggctatatgagcatctccaacggac |
43329607 |
T |
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