View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_30 (Length: 401)
Name: NF18406_low_30
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 14740303 - 14739936
Alignment:
| Q |
19 |
actccgacactaaaatttgtcgtggttagtccgatctccatagttgatgcaaatattggtcttgagtttgactatccacaaagtgaacaatatcgtgctg |
118 |
Q |
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| T |
14740303 |
actccgacactaaaatttgtcgtggttagtccgatctccatagttgatgcaaatattggtcttgagtttgactatccacaaagtgaacaatatcgtgctg |
14740204 |
T |
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| Q |
119 |
agtgtgtatttgagctattgagtgcacttaaaggtgtcaagtctctcactatgacaagtgatacttttcaggtatgtttgttggttttctcgtcattttt |
218 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14740203 |
agtgtctatttgagctattgagtgcacttaaaggtgtcaagtctctcactatgacaagtgatacttttcaggtatgtttgttggttttctcgtcattttt |
14740104 |
T |
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| Q |
219 |
cattttctttagtatatttagaaatgatgcctattgacattgtgcctttatttttatgcnnnnnnnaatcattgcttatttctgtgtatcacacaacaac |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
14740103 |
cattttctttagtatatttagaaatgatgcctattgacattgtgcctttatttttatgctttttttaatcattgcttatttctgtgtatcacaaaacaac |
14740004 |
T |
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| Q |
319 |
tgatattggtttgcttcctccacaagtctctttacttttcagcggatactctccatctccttcctttg |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14740003 |
tgatattggtttgcttcctccacaagtctctttacttttcagcggatactctccatctccttcctttg |
14739936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 17585900 - 17586276
Alignment:
| Q |
19 |
actccgacactaaaatttgtcgtggttagtccgatctccatagttgatgcaaatattggtcttgagtttgactatccacaaagtgaacaatatcgtgctg |
118 |
Q |
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||||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
17585900 |
actccgacactaaaatttgtcctggttaatctgatctccattgttgatgcaaatattggtcttgagtttgactatccacaaagcgaacaatatgctgctc |
17585999 |
T |
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| Q |
119 |
agtgtgtatttgagctattgagtgcacttaaaggtgtcaagtctctcactatgacaagtgatacttttcaggtatgtttgttggttttctcgtcattttt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
17586000 |
agtgtgtatttgagctattgagtgcacttaaaggtgtcaagtctctcactatgacaagtgatacttttcaggtatctttgtttgttttctcgtcattttt |
17586099 |
T |
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| Q |
219 |
cattttctttagtatatttagaaatgatgcctattgacattg-tgcctttatttttatg----cnnnnnnnaatcattgctta--tttctgtgtatcaca |
311 |
Q |
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||||||||||||||||||| || |||||||||||||||||| ||||||| |||| || |||| ||||||| ||||| ||||| ||| |
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| T |
17586100 |
-attttctttagtatatttacaagtgatgcctattgacattgttgccttttgttttgtgttttttttaattaatcgttgcttatttttctatgtatgaca |
17586198 |
T |
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| Q |
312 |
caacaa---ctgatattggtttgcttcctccacaagtctctttacttttcagcggatactctccatctccttcctttg |
386 |
Q |
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||| || ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17586199 |
caataatcgtcgatcttggtttgcttcctccattagtctctttacttttcggcggatactctccatctccttcctttg |
17586276 |
T |
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