View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_31 (Length: 391)
Name: NF18406_low_31
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_31 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 375
Target Start/End: Original strand, 11996856 - 11997219
Alignment:
| Q |
12 |
atgaaggaaaattcagcttaagtcttaacacatctttcacctttccaaaactaaaaaagaaagaatcaagctcagtaattaccttccatcaggcaagtaa |
111 |
Q |
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| T |
11996856 |
atgaatgaaaattcagcttaagtcttaacacatctttcacctttccaaaactaaaaaagaaagaatcaagctcagtaattaccttccatcaggcaagtaa |
11996955 |
T |
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| Q |
112 |
cgacggatggtaaagggtatctttttctctcgaagctctttcatggcaatctacgaagttgagtgaacaagatatcagacatttgtgtccaaaatgtatc |
211 |
Q |
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| T |
11996956 |
cgacggatggtaaagggtatctttttctctcgaagctctttcatggcaatctacgaagttgagtgaacaagatatcagacatttgtgtccaaaatgtatc |
11997055 |
T |
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| Q |
212 |
aaatggttaagtgatacatgaacaaaaatcccatgcaaactaatgagtttcaaactatataaaacaattaataattaatttgggattgatatatggtatt |
311 |
Q |
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| T |
11997056 |
aaatggttaagtgatacatgaacaaaaatcccatgcaaactaatgagtttcaaactatataaaacaattaataattaatttgggattgatatatggtatt |
11997155 |
T |
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| Q |
312 |
ggccatccgaaggagatatttacaaacttactattcaaaggtttattagaatccacgttcaatg |
375 |
Q |
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| T |
11997156 |
ggccatccaaaggagatatgtacaaacttactattcaaaggtttattagaatcaacgttcaatg |
11997219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 64 - 373
Target Start/End: Complemental strand, 106282 - 105972
Alignment:
| Q |
64 |
aaaaaagaaagaatcaagctcagtaattaccttccatcaggcaagtaacgacggatggtaaagggtatctttttctctcgaagctctttcatggcaatct |
163 |
Q |
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| T |
106282 |
aaaaaaaaaggaatcaagcacagtaattaccttccatcaggcaaataacgacggatggtaaagggtatctttttctctcgaagctctttcatggcaatct |
106183 |
T |
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| Q |
164 |
acgaagttgagtgaacaagatatcagacatttgtgtccaaaatgtatcaaatggttaagtgatacatgaac-aaaaatcccatgcaaactaatgagtttc |
262 |
Q |
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| T |
106182 |
gtgaagttgagtgaacaagatatcagacattcacatccaagatgtatcaaattgttaaatgatacatgaacgaaaaatcccatgcaaactaaagaatttg |
106083 |
T |
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| Q |
263 |
aaactatataaaacaattaataattaatttgggattgatatatggtattggccatccgaaggagatatttacaaacttactattcaaaggtttattagaa |
362 |
Q |
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| T |
106082 |
aaattacataaaatagttaaaaatcaatttggaattgatatatggcattggccatccaaaggagatatttacaatcttattattcaaaggtttatcagaa |
105983 |
T |
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| Q |
363 |
tccacgttcaa |
373 |
Q |
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| T |
105982 |
tcaacattcaa |
105972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 36634849 - 36634771
Alignment:
| Q |
85 |
agtaattaccttccatcaggcaagtaacgacggatggtaaagggtatctttttctctcgaagctctttcatggcaatct |
163 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||| || || || |||||| ||||| ||||||||||||| |
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| T |
36634849 |
agtatttaccttccatcaggcaagtagcgacggatggtaaaaggaattttccgctctcgtagctccttcatggcaatct |
36634771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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