View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_33 (Length: 390)
Name: NF18406_low_33
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 29461250 - 29460877
Alignment:
| Q |
1 |
aatctccatgttgttatgttgatttgaagctaaagatagtttgaacaagatattattatgaagggtaacataaaataagcttaaaagagataagaaaaga |
100 |
Q |
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| T |
29461250 |
aatctccatgttgttatgtagatttgaagctaaagatagtttgaacaagatattattatgaatggtaacataaaataagcttaaaagagataagaaaaga |
29461151 |
T |
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| Q |
101 |
aatctagaatggatgtacaacaaatgcaaaacaactaaccattaatgctgtacctaatcaaacagttacatggaaaaattatgaagagagagaaaagatg |
200 |
Q |
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| T |
29461150 |
aatctagaatggatgtacaacaaatgcaaaacaactaaccattaatgctgtacctaatcaaacagttacatggaaaaattatgaagagagagaaaagatg |
29461051 |
T |
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| Q |
201 |
ggagagtttaatgtcttgggtatgaacggatagaagcatataggtggcaagtaaaggaaattaatgtgaaggttacatgtgcttacatatacaccatgct |
300 |
Q |
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| T |
29461050 |
ggagagtttaatgtcttgggtatgaacggatagaagcatataggtggcaagtaaaggaaattaatgtgaaggttacatgtgcttacatatacaccatact |
29460951 |
T |
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| Q |
301 |
tttgatcagtcacacaaatttgatatcaatgaatgttgttgcattctcaaaccgtcgtttttattagtactagt |
374 |
Q |
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| T |
29460950 |
tttgatcagtcacacaaatttgatatcaatgaatgttgttgcattctcaaaccgtcgtttttattagtactagt |
29460877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 29426036 - 29425893
Alignment:
| Q |
14 |
ttatgttgatttgaagctaaagatagtttgaacaagatattattatgaagggta------acataaaataagcttaaaagagataagaaaagaaatctag |
107 |
Q |
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| T |
29426036 |
ttatgttgatttgaagctaaagg-agtttgatttatttattattatgaagggtacgtataacataaaataagcttaaaagatataag-aatgaaatctag |
29425939 |
T |
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| Q |
108 |
aatggatgtacaacaaatgcaaaacaactaaccattaatgctgtacc |
154 |
Q |
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| T |
29425938 |
aat-gatgtatatcaaataaaaaacaactaacaattaatgttgtacc |
29425893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 29425890 - 29425850
Alignment:
| Q |
168 |
acatggaaaaattatgaagagagagaaaagatgggagagtt |
208 |
Q |
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| T |
29425890 |
acatggaaaaattatgaagagatagagtagatgggagagtt |
29425850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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