View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_34 (Length: 388)
Name: NF18406_low_34
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 28 - 373
Target Start/End: Original strand, 43829731 - 43830076
Alignment:
| Q |
28 |
ttaagacactttataaaatataaaagagaactgaacttactaaactactagtaaggaaaacaaatagtctggtttactttctaagtatatttttatgttt |
127 |
Q |
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| T |
43829731 |
ttaagacactttataaaacataaaagagaactgaacttagtaaactactagtaaggaaaacaaatattctggtttactttctaactatatttttatgttt |
43829830 |
T |
|
| Q |
128 |
cattttaactttatatagtctacttttgaaatgacatttggctatggattttataagtaagtttgatatgctatacactaagaaccaaaaaagtgttaca |
227 |
Q |
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| T |
43829831 |
cattttaactttatgtagtctacttttgaaatgacatttggctatggattttataagtaagtttgatatgctatacactaagaaccaaaaaagtgttaca |
43829930 |
T |
|
| Q |
228 |
taaaaggtttgaagtacctgaatttcagaaagtatgcatccatgcatggccataaccataaacgcgcaatacctaagagcctcacttactttgacataat |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
43829931 |
taaaaggtttgaagtacctgaatttcagaaagtatgcatccatgcatggccataaccacaaacgcgcaatacctaagagcctcgcttactttgacataat |
43830030 |
T |
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| Q |
328 |
tcttccatggatatttaagcattttgtatttaccatgaggtggttc |
373 |
Q |
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| T |
43830031 |
tcttccatggatatttaagcattttgtatttaccatgaggtggttc |
43830076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 238 - 373
Target Start/End: Original strand, 43822359 - 43822494
Alignment:
| Q |
238 |
gaagtacctgaatttcagaaagtatgcatccatgcatggccataaccataaacgcgcaatacctaagagcctcacttactttgacataattcttccatgg |
337 |
Q |
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| T |
43822359 |
gaagtacctgaatttcagaaagtatgcatccatgcatggccatgaccatgaatgcacaatgtcttagagccccacttactttgacataattcttccatgg |
43822458 |
T |
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| Q |
338 |
atatttaagcattttgtatttaccatgaggtggttc |
373 |
Q |
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||| |||||||||||||||||||||||||||||||| |
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| T |
43822459 |
atagttaagcattttgtatttaccatgaggtggttc |
43822494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 239 - 373
Target Start/End: Original strand, 43815160 - 43815294
Alignment:
| Q |
239 |
aagtacctgaatttcagaaagtatgcatccatgcatggccataaccataaacgcgcaatacctaagagcctcacttactttgacataattcttccatgga |
338 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||| || |||||| |||||||||| |||||||||||||||||| |
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| T |
43815160 |
aagtacctgtatttcagaaagtatgcatccatgcatggccatgaccataaatgcgcaatgtcttagagccccacttactttcacataattcttccatgga |
43815259 |
T |
|
| Q |
339 |
tatttaagcattttgtatttaccatgaggtggttc |
373 |
Q |
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|||||||| || |||| | ||||||||||||||| |
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| T |
43815260 |
tatttaagacttctgtagtgaccatgaggtggttc |
43815294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 239 - 370
Target Start/End: Complemental strand, 31808501 - 31808370
Alignment:
| Q |
239 |
aagtacctgaatttcagaaagtatgcatccatgcatggccataaccataaacgcgcaatacctaagagcctcacttactttgacataattcttccatgga |
338 |
Q |
| |
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||||||||| |||||||||||||| ||||||||||| ||||| |||||||| || |||| ||| || || |||||||||| |||||||| ||||||||| |
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| T |
31808501 |
aagtacctgtatttcagaaagtatacatccatgcatagccatcaccataaatgcacaatgcctgagtgctccacttactttaacataatttttccatgga |
31808402 |
T |
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| Q |
339 |
tatttaagcattttgtatttaccatgaggtgg |
370 |
Q |
| |
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||| ||| ||||||||| |||||||||||| |
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| T |
31808401 |
tatctaaacattttgtaacgaccatgaggtgg |
31808370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 50244672 - 50244626
Alignment:
| Q |
240 |
agtacctgaatttcagaaagtatgcatccatgcatggccataaccat |
286 |
Q |
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|||||||| ||||| |||||||||||||||||||| ||||| ||||| |
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| T |
50244672 |
agtacctgtatttctgaaagtatgcatccatgcattgccatgaccat |
50244626 |
T |
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