View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_37 (Length: 376)
Name: NF18406_low_37
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 19544438 - 19544793
Alignment:
| Q |
14 |
atatatgatgtggcaaattgaagagttatgaatgagtggcattgtaaaataacttaagattaacggcatatataataagggttagttcctaacctcagtt |
113 |
Q |
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| T |
19544438 |
atatatgatgtggcaaattgaagagttatgaatgaatggcattgtaaaataacttaagattaacggcatatataattagggttagttcctaacctcagtt |
19544537 |
T |
|
| Q |
114 |
gcagcagaagcaggtccaaagcatacaattctacctgaagagagtagacaaaggttgtgaaaaagttggaaat-ttcggtaccaggttgatggatggaag |
212 |
Q |
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| T |
19544538 |
gcagcagaagcaggtccaaagtatacaagtctacctgaagagagaagacaaaggttgtgaaaaagttgaaaaacttcggtaccaggttgatggatggaag |
19544637 |
T |
|
| Q |
213 |
taataatagtcctctgaatgccatctttatgatccaaggtagcaattattgtcataacatagtaagaagcagcactatcaagtccactggttggttcatc |
312 |
Q |
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| T |
19544638 |
taataatagtcctctgaataccatctttatgatccaaggtagcaattcttgtcataacatagtaagaagcagcactatcaagtccacttgttggttcatc |
19544737 |
T |
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| Q |
313 |
aagaaaaagaagttttgggcgtgtaaggatctcaatgcaaatgctaactctccttt |
368 |
Q |
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| T |
19544738 |
aagaaaaagaagttttggacgtgtaaggatctcaatgcaaatgctaactctccttt |
19544793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 96 - 368
Target Start/End: Complemental strand, 37321998 - 37321725
Alignment:
| Q |
96 |
tagttcctaacctcagttgcagcagaagcaggtccaaagcatacaattctacctgaagagagtagacaaaggttgtgaaaaagttggaaat-ttcggtac |
194 |
Q |
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| T |
37321998 |
tagttcctaacctcacaagcagtagaagcaggtccaaagtaaactgttctacctgaagacagaagacataggttatgaaaaagttgaaaaacttcagtac |
37321899 |
T |
|
| Q |
195 |
caggttgatggatggaagtaataatagtcctctgaatgccatctttatgatccaaggtagcaattattgtcataacatagtaagaagcagcactatcaag |
294 |
Q |
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||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
37321898 |
taggttgatggatggatgtaataatagtcctccgaattccatctttatgatccaaagtagcaattcttttcataacatagtaagaagcagcactatcaag |
37321799 |
T |
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| Q |
295 |
tccactggttggttcatcaagaaaaagaagttttgggcgtgtaaggatctcaatgcaaatgctaactctccttt |
368 |
Q |
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| T |
37321798 |
tccactagttggctcatcaagaaatagaagtctaggacgtgttaggatctcaatgcaaatgctaactctccttt |
37321725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 90 - 368
Target Start/End: Complemental strand, 37330926 - 37330647
Alignment:
| Q |
90 |
aagggttagttcctaacctcagttgcagcagaagcaggtccaaagcatacaattctacctgaagagagtagacaaaggttgtgaaaaagttggaaat-tt |
188 |
Q |
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||||||| ||| | ||||||| ||||||| |||||||||||||| | || ||||||||||||| || ||||||||||| ||||| ||||| ||| || |
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| T |
37330926 |
aagggttggtttcaaacctcacatgcagcataagcaggtccaaagtaaactgttctacctgaagacagaagacaaaggttatgaaagagttgaaaaactt |
37330827 |
T |
|
| Q |
189 |
cggtaccaggttgatggatggaagtaataatagtcctctgaatgccatctttatgatccaaggtagcaattattgtcataacatagtaagaagcagcact |
288 |
Q |
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| |||| ||||||||||||||| |||||||| ||||| ||||| ||||| || | ||||||| ||||||| || ||||||||||||||||||||||||| |
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| T |
37330826 |
cagtactaggttgatggatggatgtaataattgtcctttgaattccatcctttttgtccaaggaagcaattcttttcataacatagtaagaagcagcact |
37330727 |
T |
|
| Q |
289 |
atcaagtccactggttggttcatcaagaaaaagaagttttgggcgtgtaaggatctcaatgcaaatgctaactctccttt |
368 |
Q |
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| T |
37330726 |
atcaagtccactagttggctcatcaagaaaaagaagtctaggacgtgttaggatctcaatgcaaatgctaactctccttt |
37330647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 100 - 368
Target Start/End: Original strand, 37346689 - 37346958
Alignment:
| Q |
100 |
tcctaacctcagttgcagcagaagcaggtccaaagcatacaattctacctgaagagagtagacaaaggttgtgaaaaagttggaaat-ttcggtaccagg |
198 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| | || || |||| ||||| | |||||||| || || |||||||| ||| ||| |||| || |
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| T |
37346689 |
tcctaacctcagatgcagcagaagcaggtccaaagtaaactgttttaccagaagacaaaagacaaagattatggaaaagttgaaaaacttcagtacttgg |
37346788 |
T |
|
| Q |
199 |
ttgatggatggaagtaataatagtcctctgaatgccatctttatgatccaaggtagcaattattgtcataacatagtaagaagcagcactatcaagtcca |
298 |
Q |
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||||||||| || | || ||| ||||| ||||| ||||| || | ||||||| ||| ||| || ||||||||||||||||||||||||||||||||||| |
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| T |
37346789 |
ttgatggattgaggcaacaatggtcctttgaattccatcctttttgtccaaggaagctattcttttcataacatagtaagaagcagcactatcaagtcca |
37346888 |
T |
|
| Q |
299 |
ctggttggttcatcaagaaaaagaagttttgggcgtgtaaggatctcaatgcaaatgctaactctccttt |
368 |
Q |
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|| ||||||||||||||||| |||||| |||| |||||||| ||||||||| |||||||||||||||||| |
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| T |
37346889 |
ctagttggttcatcaagaaatagaagtcttggacgtgtaagaatctcaatggaaatgctaactctccttt |
37346958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 367
Target Start/End: Complemental strand, 37298434 - 37298331
Alignment:
| Q |
264 |
tcataacatagtaagaagcagcactatcaagtccactggttggttcatcaagaaaaagaagttttgggcgtgtaaggatctcaatgcaaatgctaactct |
363 |
Q |
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||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||| | ||| | || || ||||||||||||||||| | ||| |
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| T |
37298434 |
tcataacatagtaggaagctgcactatcaagtccactagttggttcatcaaggaaaagaagtctagggtgagttagaatctcaatgcaaatgcttagtct |
37298335 |
T |
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| Q |
364 |
cctt |
367 |
Q |
| |
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|||| |
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| T |
37298334 |
cctt |
37298331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 359
Target Start/End: Complemental strand, 37291316 - 37291221
Alignment:
| Q |
264 |
tcataacatagtaagaagcagcactatcaagtccactggttggttcatcaagaaaaagaagttttgggcgtgtaaggatctcaatgcaaatgctaa |
359 |
Q |
| |
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||||||||||||| ||||| |||||||||||||| || || ||||||||||| || |||||| | ||||| || || ||||| ||||||||||||| |
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| T |
37291316 |
tcataacatagtaggaagctgcactatcaagtccgctagtcggttcatcaaggaagagaagtctcgggcgcgttagaatctcgatgcaaatgctaa |
37291221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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