View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_41 (Length: 360)
Name: NF18406_low_41
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_41 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 36287268 - 36287631
Alignment:
| Q |
16 |
catgactcgagtatctcgatggggcctggcccaacaaatctcggttcttgaataagcttcgatattatattaaaattagagttaacctagttcgatttat |
115 |
Q |
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| T |
36287268 |
catgactcgagtatcccgatggggcctggcccaacaaatctcgattcttgaataagcttcgatattatattaaaattagagttaacctagttcgatttat |
36287367 |
T |
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| Q |
116 |
acaaaatcaacttgtaacgtg--atatatatcacttaaaatgttttcgtgacatctcattttacatgtgactctcaacaataattatatttttaaaatac |
213 |
Q |
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| T |
36287368 |
acaaaatcaacttgtaacgtgatatatatatcacttaaaacgttttcgtgacatctcattttacatatgactctcaacaataattatatttttaaaatac |
36287467 |
T |
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| Q |
214 |
atatgacaaattttggagagactaaac-----------------tcaaattcactcattacagtgagatgaaaagggcatttaatcagacaatttacatg |
296 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
36287468 |
atatgacaaattttggagagactaaactcaaattcactcatttatcaaattcactcattacagtgagatgaaaaagacatttaatcagacaatttacatg |
36287567 |
T |
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| Q |
297 |
gctgtattatatgatcggtagtaaaaacnnnnnnnctttcatgagaaaacatggtctaagcccc |
360 |
Q |
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| T |
36287568 |
gctgtattatatgatcggtagtaaaaactttttttctttcatgagaaaacatggtctaagcccc |
36287631 |
T |
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