View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_43 (Length: 346)
Name: NF18406_low_43
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_43 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 346
Target Start/End: Complemental strand, 38729897 - 38729564
Alignment:
| Q |
9 |
gagatgaaattcgcagggttcagaccaaactttggcttgtttacattgatcattgagtcacatgcaaaatcagggaagcttgatattgatatgtctgcat |
108 |
Q |
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| T |
38729897 |
gagatgaaattagcagggttcagaccaaactttggcttgtatacattgatcattgagtcacatgcaaaatcagggaagcttgatattgctatgtctgcat |
38729798 |
T |
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| Q |
109 |
tttcagatatatatggagaaagctggatttctaccaactccatctacgtatgcttgtctcttggaaatgcatgctgcgtctggacaaattgatcatgcca |
208 |
Q |
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| T |
38729797 |
tttcagatat----ggagaaagctggatttctaccaactccatctacatatgcttgtctcttggaaatgcatgctgcgtctggacaaatcgatcatgcta |
38729702 |
T |
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| Q |
209 |
tcaaactgtacaattcaatgactaatgcaggtttaaggccaggcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgt |
308 |
Q |
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| T |
38729701 |
tgaaactgtacaattcaatgactaatgcaggtttaaggccaggcctgagcacttatactgttcttttatctctacttgctaataagaagctggtggatgt |
38729602 |
T |
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| Q |
309 |
tgctgccaaagttctacttgaaatgaagaccatgggat |
346 |
Q |
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| T |
38729601 |
tgctgccaaagttctacttgaaatgaagacaatgggat |
38729564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 38 - 346
Target Start/End: Original strand, 385674 - 385978
Alignment:
| Q |
38 |
ctttggcttgtttacattgatcattgagtcacatgcaaaatcagggaagcttgatattgatatgtctgcattttcagatatatatggagaaagctggatt |
137 |
Q |
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| T |
385674 |
ctttggcttgtatacattgatcatcgagtctcatgcaaaatcagggaagcttgatattgctatgtctgcattttcagacat----ggagaaagctggatt |
385769 |
T |
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| Q |
138 |
tctaccaactccatctacgtatgcttgtctcttggaaatgcatgctgcgtctggacaaattgatcatgccatcaaactgtacaattcaatgactaatgca |
237 |
Q |
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| T |
385770 |
tctactaactctatctacatacgcttgtctattggaaatgcatgcttcatccggacaaattgatcatgccatgaaactgtacaattcaatgactaatgca |
385869 |
T |
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| Q |
238 |
ggtttaaggccaggcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgttgctgccaaagttctacttgaaatgaaga |
337 |
Q |
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| T |
385870 |
ggtttaaggccaggcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgttgctgccaaagttctacttgaaatgaaga |
385969 |
T |
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| Q |
338 |
ccatgggat |
346 |
Q |
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| T |
385970 |
cgatgggat |
385978 |
T |
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