View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18406_low_47 (Length: 341)

Name: NF18406_low_47
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18406_low_47
NF18406_low_47
[»] chr3 (8 HSPs)
chr3 (15-231)||(24923430-24923646)
chr3 (15-214)||(24982042-24982241)
chr3 (15-210)||(24919877-24920072)
chr3 (16-214)||(25085035-25085233)
chr3 (15-210)||(24497250-24497445)
chr3 (16-225)||(31825533-31825742)
chr3 (16-220)||(21584578-21584782)
chr3 (267-323)||(24923336-24923392)
[»] chr7 (4 HSPs)
chr7 (16-213)||(10575384-10575581)
chr7 (22-208)||(39954838-39955024)
chr7 (16-161)||(354401-354547)
chr7 (16-222)||(10580784-10580973)
[»] chr8 (1 HSPs)
chr8 (16-226)||(14261007-14261217)
[»] chr2 (1 HSPs)
chr2 (43-200)||(41027596-41027753)
[»] chr4 (3 HSPs)
chr4 (37-200)||(22898571-22898734)
chr4 (37-200)||(22950239-22950402)
chr4 (22-185)||(53328717-53328880)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 24923646 - 24923430
Alignment:
Q  15 aagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgcagttaca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  24923646 aagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgaca 24923547  T
Q  115 tacactgagcacgctaggaggaagactgtgacagccatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggtggttgaagaa 214  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||    
T  24923546 tacactgagcacgcaaggaggaagacagtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctctatggatttggaggttgaagaa 24923447  T
Q  215 tatgaagaagaaacact 231  Q
    |||||||||||||||||    
T  24923446 tatgaagaagaaacact 24923430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 24982042 - 24982241
Alignment:
Q  15 aagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgcagttaca 114  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24982042 aagaagaggtggtgttaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttaca 24982141  T
Q  115 tacactgagcacgctaggaggaagactgtgacagccatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggtggttgaagaa 214  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||    
T  24982142 tacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcggtggttgaagaa 24982241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 24920072 - 24919877
Alignment:
Q  15 aagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgcagttaca 114  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||    
T  24920072 aagaagaggtggtgtgaagagaatcagcggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgaca 24919973  T
Q  115 tacactgagcacgctaggaggaagactgtgacagccatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggtggttga 210  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24919972 tacactgagcacgctaggaggaagacagtgacagccatggatgtcgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttga 24919877  T

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Target: chr3; HSP #4
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 25085035 - 25085233
Alignment:
Q  16 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgcagttacat 115  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  25085035 agaagaggtggtgtgaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacat 25085134  T
Q  116 acactgagcacgctaggaggaagactgtgacagccatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggtggttgaagaa 214  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || || ||||||||||    
T  25085135 acactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctctatggttttggaggttgaagaa 25085233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 24497445 - 24497250
Alignment:
Q  15 aagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgcagttaca 114  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||    
T  24497445 aagaagaggtggtgttaagagaatcagtggattgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttaca 24497346  T
Q  115 tacactgagcacgctaggaggaagactgtgacagccatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggtggttga 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || || ||||||    
T  24497345 tacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggttttggaggttga 24497250  T

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Target: chr3; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 31825742 - 31825533
Alignment:
Q  16 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgcagttacat 115  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||    
T  31825742 agaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaactagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacat 31825643  T
Q  116 acactgagcacgctaggaggaagactgtgacagccatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggtggttgaagaat 215  Q
    ||||||||||||||||||||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||     
T  31825642 acactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgatgaag 31825543  T
Q  216 atgaagaaga 225  Q
    | ||||||||    
T  31825542 aagaagaaga 31825533  T

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Target: chr3; HSP #7
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 21584782 - 21584578
Alignment:
Q  16 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgcagttacat 115  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||  | ||||| |||||||||||||| ||||||||||| ||||| |    
T  21584782 agaagaggtggtgttaagagaatcagtggtttgatttatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtgatgcggttacgt 21584683  T
Q  116 acactgagcacgctaggaggaagactgtgacagccatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggtggttgaagaat 215  Q
    |||||||||| || ||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||| || ||||||||||| ||||||||||     
T  21584682 acactgagcatgcaaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacgctttatggattcggaggttgaagaag 21584583  T
Q  216 atgaa 220  Q
    |||||    
T  21584582 atgaa 21584578  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 24923392 - 24923336
Alignment:
Q  267 gtaatttgaatattcgattctaatctggaattcttgttatgatatttaggttaatat 323  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24923392 gtaatttgaatatgcgattctaatctggaattcttgttatgatatttaggttaatat 24923336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 10575384 - 10575581
Alignment:
Q  16 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgcagttacat 115  Q
    |||||||| ||||| || ||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||  | ||||| ||||| |    
T  10575384 agaagaggaggtgtgaaaagaatcagtggattgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttactt 10575483  T
Q  116 acactgagcacgctaggaggaagactgtgacagccatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggtggttgaaga 213  Q
    |||||||||| || |||||||| |||||||| || ||||||||||| || ||  | ||||| || ||||||||||||||||| |||||||||||||||    
T  10575484 acactgagcatgcgaggaggaaaactgtgactgctatggatgttgtttacgcgcttaagagacaaggaagaaccctctatggtttcggtggttgaaga 10575581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 39955024 - 39954838
Alignment:
Q  22 ggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgcagttacatacactg 121  Q
    |||||||| ||||||||||| ||| | ||||| ||||| ||  | |||||  | ||||||||  | |||||||| ||||||||||| ||||| |||||||    
T  39955024 ggtggtgtgaagagaatcagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgctgttacttacactg 39954925  T
Q  122 agcacgctaggaggaagactgtgacagccatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggtggtt 208  Q
    |||| ||||||||||| ||||| || |||||||||||||| |||||| | |||||||||||||| || ||||| || ||||||||||    
T  39954924 agcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggactctctacggtttcggtggtt 39954838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 354401 - 354547
Alignment:
Q  16 agaagaggtggtgttaagagaatcagtggtttga-tctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgcagttaca 114  Q
    |||||||||||||| ||||| ||||||||||| | ||||||| ||||  ||||| || |||||||| |||||| ||||||  ||| ||||||| |||||     
T  354401 agaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttact 354500  T
Q  115 tacactgagcacgctaggaggaagactgtgacagccatggatgttgt 161  Q
    ||||||||||| || |||||||||||| |||| || |||||||||||    
T  354501 tacactgagcatgcaaggaggaagactctgactgctatggatgttgt 354547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 10580784 - 10580973
Alignment:
Q  16 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgcagttacat 115  Q
    ||||||| |||||| ||||| |||||||||||||||||||| ||||  |||||  | |||||||| |||||| |||||   |||| |||||| ||||| |    
T  10580784 agaagagttggtgtgaagaggatcagtggtttgatctatgaggaaataagaggactgttgaagattttcttgcagaataagattcttgatgctgttactt 10580883  T
Q  116 acactgagcacgctaggaggaagactgtgacagccatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggtggttgaagaat 215  Q
    |||||||||| |     ||||||||| |||| || ||||||||||| |||            |||||||||||||||||||| || ||||| |||||||     
T  10580884 acactgagcatg-----aggaagactctgactgctatggatgttgtttat------------cagggaagaaccctctatggttttggtggatgaagaag 10580966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 14261217 - 14261007
Alignment:
Q  16 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgcagttacat 115  Q
    |||||||| ||||| ||||||||||| || ||||| |||||||||||  | ||||| |||||||| |||||||||||||| ||  | ||||| ||||| |    
T  14261217 agaagaggaggtgtgaagagaatcagcgggttgatttatgaagaaactcgcggtgtgttgaagattttcttggagaatgtgataagagatgctgttacgt 14261118  T
Q  116 acactgagcacgctaggaggaagactgtgacagccatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggtggttgaagaat 215  Q
    | ||||| || || ||||||||||| || || || ||||||||||| ||||| |||||||| || ||||| ||  | ||||| ||||| ||||||||||     
T  14261117 atactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgtatggtttcggaggttgaagaag 14261018  T
Q  216 atgaagaagaa 226  Q
    |||| ||||||    
T  14261017 atgatgaagaa 14261007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 43 - 200
Target Start/End: Original strand, 41027596 - 41027753
Alignment:
Q  43 ggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgcagttacatacactgagcacgctaggaggaagactg 142  Q
    ||||||||||| ||||| ||  | || || ||||||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||||| |||||||    
T  41027596 ggtttgatctacgaagagacacgtggcgtgttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactg 41027695  T
Q  143 tgacagccatggatgttgtctatgctttgaagaggcagggaagaaccctctatggatt 200  Q
    | || || ||||||||||| ||||| |||||||| || ||||| || || ||||||||    
T  41027696 ttactgctatggatgttgtttatgcattgaagagacaaggaaggactctttatggatt 41027753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 200
Target Start/End: Original strand, 22898571 - 22898734
Alignment:
Q  37 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgcagttacatacactgagcacgctaggagga 136  Q
    |||||||||||||| ||||| || ||  | || || |||||||| || ||||||||||| ||| | ||||| || || ||||||||||||||||| ||||    
T  22898571 atcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaagga 22898670  T
Q  137 agactgtgacagccatggatgttgtctatgctttgaagaggcagggaagaaccctctatggatt 200  Q
    |||| || || || |||||||| || |||||  | ||||| |||||||||||||| || |||||    
T  22898671 agacggttactgctatggatgtggtttatgccctcaagagacagggaagaaccctttacggatt 22898734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 200
Target Start/End: Original strand, 22950239 - 22950402
Alignment:
Q  37 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgcagttacatacactgagcacgctaggagga 136  Q
    |||||||||||||| ||||| || ||  | || || |||||||| || ||||||||||| ||| | ||||| || || ||||||||||||||||| ||||    
T  22950239 atcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaagga 22950338  T
Q  137 agactgtgacagccatggatgttgtctatgctttgaagaggcagggaagaaccctctatggatt 200  Q
    |||| || || || |||||||| || |||||  | ||||| |||||||||||||| || |||||    
T  22950339 agacggttactgctatggatgtggtttatgccctcaagagacagggaagaaccctttacggatt 22950402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 53328717 - 53328880
Alignment:
Q  22 ggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgcagttacatacactg 121  Q
    |||||||| ||| | |||||||| || ||||||||||||||  | || ||  | ||||||||  | |||||||| ||||||||||| || |||||||| |    
T  53328717 ggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgctgtcacatacacag 53328816  T
Q  122 agcacgctaggaggaagactgtgacagccatggatgttgtctatgctttgaagaggcagggaag 185  Q
    |||| ||| |  | |||||||| || || ||||||||||| || ||| | ||||||||||||||    
T  53328817 agcatgctcgccgtaagactgttactgcaatggatgttgtttacgctctcaagaggcagggaag 53328880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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