View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_49 (Length: 338)
Name: NF18406_low_49
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 324
Target Start/End: Complemental strand, 31749212 - 31748902
Alignment:
| Q |
14 |
agagtttgatgagggtgatggggattccaggactcactttgtaccatcttaaaagtcatttacaggtatcataatctttttcctacactgaatccaaaaa |
113 |
Q |
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| T |
31749212 |
agagtttgatgagggtgatggggattccaggactcactttgtaccatcttaaaagtcatttacaggtatcataatctttttcctacactgaatccaaaaa |
31749113 |
T |
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| Q |
114 |
ctataagagtttgagcttatttgattttctggttattacagaaatatagacttggcaaaagccaactggtagaaacctgttctgacaacaaacaaggtga |
213 |
Q |
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| T |
31749112 |
ctataagagtttgagcttatttgattttctggttattacagaaatatagacttggcaaaagccaactggtagaaacctgttctgacaacaaacaaggtga |
31749013 |
T |
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| Q |
214 |
gttattgtataacagtgatagaatgattggtagttttctgatttggcataatcttgagttattgattcatggtgcagattacatagaaatccaaaacagt |
313 |
Q |
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| T |
31749012 |
gttattgtataacagtgatagaatgattggtatttttctgatttggcataatcttgagttattgattcatggtgcagattacatagaaatccaaaacagt |
31748913 |
T |
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| Q |
314 |
gatggtcaatg |
324 |
Q |
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| T |
31748912 |
gatggtcaatg |
31748902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 18170270 - 18170210
Alignment:
| Q |
22 |
atgagggtgatggggattccaggactcactttgtaccatcttaaaagtcatttacaggtat |
82 |
Q |
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| T |
18170270 |
atgagggtgatggaaattccaggacttactttgtaccatctcaagagccatttacaggtat |
18170210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 18170137 - 18170085
Alignment:
| Q |
153 |
agaaatatagacttggcaaaagccaactggtagaaacctgttctgacaacaaa |
205 |
Q |
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| T |
18170137 |
agaaatatagacttgggaaaagccaacaactagaaacctgctctgacaacaaa |
18170085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 42777035 - 42777095
Alignment:
| Q |
22 |
atgagggtgatggggattccaggactcactttgtaccatcttaaaagtcatttacaggtat |
82 |
Q |
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| T |
42777035 |
atgagggtgatggtgactccaggactcactatgtaccatctcaataaccatttacaggtat |
42777095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 26400193 - 26400227
Alignment:
| Q |
28 |
gtgatggggattccaggactcactttgtaccatct |
62 |
Q |
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| T |
26400193 |
gtgatggggattccaggacacactttgtaccatct |
26400227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 62
Target Start/End: Original strand, 30271387 - 30271416
Alignment:
| Q |
33 |
ggggattccaggactcactttgtaccatct |
62 |
Q |
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| T |
30271387 |
ggggattccaggactcactttgtaccatct |
30271416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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