View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_5 (Length: 588)
Name: NF18406_low_5
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 25221317 - 25220985
Alignment:
| Q |
19 |
ttatggtcctattaaagaattgatctcagaagagaacccaccaatctatagagatattagcttagcagaatacatgtcacaccatttgacaaaggggctt |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25221317 |
ttatggtcctattaaagaattggtctcagaagagaacccaccaatctatagagatattagcttagcagaatacatgtcacaccatttgacaaaggggctt |
25221218 |
T |
|
| Q |
119 |
gatgggaactctgcattgcacccttttaggttgtaaaaggaacatatttcaactcaaaaataaacttaataagttgatactcttctgttgagtgtaaggt |
218 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25221217 |
gacgggaactctgcattgcacccttttaggttgtaaaaggaacatattttaactcaaaaataaacttaataagttgatattcttctgttgagtgtaaggt |
25221118 |
T |
|
| Q |
219 |
tgtggtttttgacttcttgttatgattttcatcagcaataa-aaaataaggttatatttaatgatattttagattcgggatgatgtttatggattaatag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
25221117 |
tgtggtttttgacttcttgttatgattttcatcagcaataaaaaaaaaaggttatatttaatgatattttagatttggggtgatgtttatggattaatag |
25221018 |
T |
|
| Q |
318 |
atacattattttagagttgtttctagcatattc |
350 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |
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| T |
25221017 |
atacattattttagagttgtttcttgcatattc |
25220985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 19 - 445
Target Start/End: Original strand, 26173129 - 26173569
Alignment:
| Q |
19 |
ttatggtcctattaaagaattgatctcagaagagaacccaccaatctatagagatattagcttagcagaatacatgtcacaccatttgacaaaggggctt |
118 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||||| ||||||||| |
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| T |
26173129 |
ttatggtcctattaaagaattgttatcagaagagaacccaccaatctatagagatactagcttaggagaattcatgtcacactatttgacgaaggggctt |
26173228 |
T |
|
| Q |
119 |
gatgggaactctgcattgcacccttttaggttgtaaaaggaacatatttcaactcaaaaataaacttaataagttgatac-tcttc-------tgttga- |
209 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| || || | |||| |
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| T |
26173229 |
tttgggaactctgcattgcaatcttttaggttgtaaaagtatcatatttcaactccaaaataaacttaataagttgatacttcatcacgtggtttttgac |
26173328 |
T |
|
| Q |
210 |
----gtgtaaggttgtggtttttgacttcttgttatgattttcatcagcaataaaaaataaggttatat----ttaatgatattttagattcgggatgat |
301 |
Q |
| |
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|| ||| |||||||||||| ||| ||||||||||||| |||||||||||||| || ||||||| ||||| |||||||| ||||| ||||| |
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| T |
26173329 |
ttttgttaaagattgtggtttttggcttgttgttatgatttttatcagcaataaaaa--aatgttatatttaattaataatattttaagttcggaatgat |
26173426 |
T |
|
| Q |
302 |
gtttatggattaatagatacattattttagagttgtttctagcatattcataaaatactttaattttcttgtttaagattgttgaattaatatgagtgtt |
401 |
Q |
| |
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|||||| |||||||||||| |||||||||||||||||| | ||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |||| |
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| T |
26173427 |
gtttatagattaatagataaattattttagagttgttttttgcatattcataaaatacttaatattttttgtttaagattgttgaattaatatgaatgtt |
26173526 |
T |
|
| Q |
402 |
nnnnnnntgatagaagtttgaagctatttctaatagctttatat |
445 |
Q |
| |
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| |||||||||||||||||||| | |||| ||||||| |
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| T |
26173527 |
aaaaaagt-atagaagtttgaagctattttttatagttttatat |
26173569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 19 - 445
Target Start/End: Original strand, 8352985 - 8353397
Alignment:
| Q |
19 |
ttatggtcctattaaagaattgatctcagaagagaacccaccaatctatagagatattagcttagcagaatacatgtcacaccatttgacaaaggggctt |
118 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8352985 |
ttatggtcctattaaagatttgttctcagaagagaaccccccaatctatacagatattagcttagcagaatacatgtcacaccacttgacaaaggggctt |
8353084 |
T |
|
| Q |
119 |
gatgggaactctgcattgcacccttttaggttgtaaaaggaacatatttcaactcaaaaataaacttaataagttgatactcttctg--ttgagtgtaag |
216 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8353085 |
gatgggaactctgcattgcaaccttttaagttgtaaaaagaacacatttcaactccaaaataaacttaataagttgatactcttctgttttgagtgtaag |
8353184 |
T |
|
| Q |
217 |
gttgtggtttttgacttcttgttatgattttcatcagcaataaaaaataaggttatatttaatgatattttagattcgggatgatg-tttatggattaat |
315 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||| || |||||||||||| ||||||||| |||||||||||| |
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| T |
8353185 |
gttgtggttttttacttcttgttatgattttcatcagcattaaataa-aaggttatattt-----------------gggatgatgttttatggattaac |
8353266 |
T |
|
| Q |
316 |
agatacattattttagagttgtttctagcatattcataaaatactttaa-ttttcttgtttaagattgttgaattaatatgagtgttnnnnnnntgatag |
414 |
Q |
| |
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||| || ||||||||||||||||||| ||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
8353267 |
agacacgttattttagagttgtttcttgcatattcataaaatacttcaattttttttgtttaagattgttgaattaatatgagtgttaacaaaatgatag |
8353366 |
T |
|
| Q |
415 |
aagtttgaagctatttctaatagctttatat |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
8353367 |
aagtttgaagctatttctaatagctttatat |
8353397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 41242341 - 41242399
Alignment:
| Q |
19 |
ttatggtcctattaaagaattgatctcagaagagaacccaccaatctatagagatatta |
77 |
Q |
| |
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||||||||| || || |||||| | |||||||| ||||| ||||||||||||||||||| |
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| T |
41242341 |
ttatggtccaataaaggaattgttatcagaagaaaaccctccaatctatagagatatta |
41242399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 28130722 - 28130780
Alignment:
| Q |
19 |
ttatggtcctattaaagaattgatctcagaagagaacccaccaatctatagagatatta |
77 |
Q |
| |
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||||||||| || || |||||| | |||||||| ||||| ||||||||||||||||||| |
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| T |
28130722 |
ttatggtccaataaaggaattgttatcagaagaaaaccctccaatctatagagatatta |
28130780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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