View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_51 (Length: 334)
Name: NF18406_low_51
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 317
Target Start/End: Complemental strand, 38549558 - 38549254
Alignment:
| Q |
9 |
gagatgaagcgtagaagtataatttttagagagtttcttttcccatctttcaagcttcttccatgtctacgacacttc-ggattatataatctaaaatgt |
107 |
Q |
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| T |
38549558 |
gagatgaagtgtagaagtataatttttagagagtttcttttcccatctttcaagcttattccatgtctacgacacttttggattatataatctaaaatgt |
38549459 |
T |
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| Q |
108 |
gtaaaaatgnnnnnnnnnngaaagaaaatgtgtaaaaatatttaaaacttcttcttttattagattttaaaatttgaattagggcgcaaagtttggatga |
207 |
Q |
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| T |
38549458 |
gtaaaaa--aaaaaaaattgaaagaaaatgtgtaaaaatatttaaaacttcttcttttattagattttaaaatttgaattagggagcaaagtttggatga |
38549361 |
T |
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| Q |
208 |
ctctaatttgtaggatacaaagagattctttcatcttaggctccattttagacatcatccaacaaactgaaattgccacacaccaaaattacattaatac |
307 |
Q |
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| T |
38549360 |
ctctaatttttaggatacaaagaga---tttcatcttgggctccattttagacatcatccaacaaactgaaattgccacacaccaaaattacattaatac |
38549264 |
T |
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| Q |
308 |
ccccaattgc |
317 |
Q |
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|||||||||| |
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| T |
38549263 |
ccccaattgc |
38549254 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 25790364 - 25790286
Alignment:
| Q |
39 |
gagtttcttttcccatctttcaagcttcttccatgt-ctacgacacttcggattatataatctaaaatgtgtaaaaatg |
116 |
Q |
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||||||||||||||| ||||||||||||| || || |||| ||| || ||||||||||||| ||| ||||||||||| |
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| T |
25790364 |
gagtttcttttcccacctttcaagcttctcgcaagtcctacaacattttagattatataatctgaaaggtgtaaaaatg |
25790286 |
T |
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