View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_52 (Length: 333)
Name: NF18406_low_52
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 1503823 - 1503917
Alignment:
| Q |
125 |
aaccaaaaagtttatccaaatatagcaagttcttctaaaattaaacatttcattatgttgtaaagtaggttttt-taaaaattcttaaatcattt |
218 |
Q |
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| T |
1503823 |
aaccagaaagttaatccaaatatagcaagttcttctaaaatgaaacatttcattatgttgtaaagtaggtttttaaaaaaattcgtaaatcattt |
1503917 |
T |
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Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 308086 - 308183
Alignment:
| Q |
1 |
atatgtaaagtccggagttcaaacctcgaccacnnnnnnnnnntatcacttaaatcaaccaacaaacaatactgattgatgactacaatcattttatat |
99 |
Q |
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| T |
308086 |
atatgtaaagtccggagttcaaacctcgaccacaaaaaaaaa-tatcacttaaatcaaccaacaaacaatactgattgatgactacaatcattttatat |
308183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 329
Target Start/End: Original strand, 1503930 - 1504003
Alignment:
| Q |
257 |
ataaccttatcatagaagttgcataaca-ctcccccttcccccaaaaaacaatcacacattatttcatctcact |
329 |
Q |
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| T |
1503930 |
ataaccttatcattgaaattgcataacaccccccccctccccaaaaaaacaataacacattatctcatgtcact |
1504003 |
T |
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