View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18406_low_53 (Length: 329)
Name: NF18406_low_53
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_53 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 311
Target Start/End: Complemental strand, 36308780 - 36308479
Alignment:
| Q |
10 |
aagaaaatgcttggttaggtttcattgatagttttttcgtagtgatagcagttaatttgccttaacgtgtgtccactccaacttttccacctctcaaaat |
109 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36308780 |
aagaaaatgcttggttaggtttcatcgatagttttttcgtagtgatagcagttaatttgccttaacgtgtgtccactccaacttttgcacctctcaaaat |
36308681 |
T |
|
| Q |
110 |
acttacctgttttcatannnnnnngatagtttggaaaccctttaaagaattttgctcgctcaagcatggcttcaacttcaacaagaacaactccaaagaa |
209 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36308680 |
acttacctcttttcatatttttttgatagtttggaaaccctttaaagaattttgctcgctcaagcatggcttcaacttcaacaagaacaactccaaagaa |
36308581 |
T |
|
| Q |
210 |
atgtcaaaacaacattgaggaaacaaagcagaacaaatgaatgaaaaggtctcctgagtgtgctagtacttcaccgagccctaaagtacaacaaggcgtt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36308580 |
atgtcaaaacaacattgaggaaacaaagcagaacaaatcaatgaaaaggtctcctgagtgtgctaatacttcaccgagccctaaagtacaacaaggcgtt |
36308481 |
T |
|
| Q |
310 |
ac |
311 |
Q |
| |
|
|| |
|
|
| T |
36308480 |
ac |
36308479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 36310121 - 36310080
Alignment:
| Q |
175 |
atggcttcaacttcaacaagaacaactccaaagaaatgtcaa |
216 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
36310121 |
atggcttcaacttcaacaggaacaactccaaaggaatgtcaa |
36310080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University