View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18406_low_54 (Length: 325)
Name: NF18406_low_54
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_54 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 12013773 - 12014066
Alignment:
| Q |
20 |
tatttggtgtctcagtgttgtgtctgtgttcgagaattctttttaaattattatgcatagtcgtatatgcattttcattttcttaaattattatgcatcg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12013773 |
tatttggtgtctcagtgttgtgtctgtgttcgagaattcttcttaaattattatgcatagtcgtatatgcattttcattttcttaaattattatgcatcg |
12013872 |
T |
|
| Q |
120 |
tcgtatatgtatgtgtcaggatagtgctctgtgtttattatgttaggggtttgtatttgttcttacaggagtactagtgctttgtttcttgattttgttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12013873 |
tcgtatatgtatgtgtcaggatagtgctctgtgtttat---gttaggggtttgtttttgttcttacaggagtactagtgctttgtttcttgattttgttt |
12013969 |
T |
|
| Q |
220 |
ttcatttacagaatacaatgatgctgagagcaattccgggattgaaagaagtgggaaaagctcttctaggtattgaacatttgcagtttacctttga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12013970 |
ttcatttacagaatacaatgatgctgagagcgattccgggattgaaacaagtgggaaaagctcttctaggtattgaacatttgcagtttacctttga |
12014066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University