View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18406_low_56 (Length: 319)
Name: NF18406_low_56
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_56 |
 | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0274 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 33370157 - 33370449
Alignment:
| Q |
16 |
cagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccc--cggtatgtggttgaggatacttt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33370157 |
cagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccccggtatgtggttgaggatacttt |
33370256 |
T |
|
| Q |
114 |
atctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactaccactctggtggt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||| |
|
|
| T |
33370257 |
atctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccattttttttcatggcagcaagtccactaccactccggtggt |
33370356 |
T |
|
| Q |
214 |
cttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggactcca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
33370357 |
cttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtctggtgacaaaaatcagatgtggactcca |
33370449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 33363815 - 33364104
Alignment:
| Q |
16 |
cagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgaggatactttat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| ||||||||| ||||||||| |
|
|
| T |
33363815 |
cagaagggactccttaccatgatggtcttttcttttttgatgtttacttcccccctaaatatcccaatgtacccccggtacgtggttgagaatactttat |
33363914 |
T |
|
| Q |
116 |
ctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactaccactctggtggtct |
215 |
Q |
| |
|
| ||||| ||||||||| || ||||| ||| |||||||||| |||||| ||| || ||||| | |||||||||||||||| |||| |
|
|
| T |
33363915 |
ttagctgacattattttcttgtgcactctttttaattcaattctgacaaa-tgggacaattttttgtggggcagaaagtccactaccactctgtaggtca |
33364013 |
T |
|
| Q |
216 |
tcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggactcca |
306 |
Q |
| |
|
|||||| || || |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
33364014 |
tcggcttaatccaaatttgtatgattgtggcaaagtatgcctcagtctacttaacacctggtctggcgacaagaatcagatgtggactcca |
33364104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 5839322 - 5839238
Alignment:
| Q |
16 |
cagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtgg |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| ||| ||||||| || ||| | |||||||| ||| ||||||||||| |
|
|
| T |
5839322 |
cagacgggactccttaccatgacggtcttttctttttcgatctttacttacctggtggctttcccaatgtaccgccggtatgtgg |
5839238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 41431871 - 41432159
Alignment:
| Q |
16 |
cagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgaggatactttat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
41431871 |
cagaagggactccttaccatgatggtcttttcttttttgatgtttacttcccccctaaatatcccaatgtacccccggtacgtggttgatgatactttat |
41431970 |
T |
|
| Q |
116 |
ctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactaccactctggtggtct |
215 |
Q |
| |
|
||||||||| ||||||||| |||||||| ||| |||||||||||||| ||| |||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
41431971 |
ctgactgacattattttcttgttcactccttttaattcaattccgac-aacgggtcca-tttttttcatggcagcaagtccactaccactctggtggtct |
41432068 |
T |
|
| Q |
216 |
tcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggactcca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||| |
|
|
| T |
41432069 |
tcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtctggcagcaagaatcagaaatggactcca |
41432159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 41442478 - 41442766
Alignment:
| Q |
16 |
cagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgaggatactttat |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| |||||||||| |||||||||| |||||| || ||||||||| |
|
|
| T |
41442478 |
cagaagggactccttaccatgacggtcttttcttttttgatgtacactttccaactggctatcccaatgtacccccggtacgtggttaagaatactttat |
41442577 |
T |
|
| Q |
116 |
ctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactaccactctggtggtct |
215 |
Q |
| |
|
||||| |||||| |||||| ||| |||| ||| |||||||||| ||||| |||| | ||||||| ||||||||||||||| | ||||| |
|
|
| T |
41442578 |
ctgacagacgttgttttcttgttaactctttttaattcaattctaacaaaagggtc--gttattttcgtggcagctagtccactaccactctagaggtct |
41442675 |
T |
|
| Q |
216 |
tcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggactcca |
306 |
Q |
| |
|
||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
41442676 |
tcgactcaaccctaatttgtatggctgtggtaaagtatgcctcagtctacttaacacctggtctggcgacagaaatcagatgtgggctcca |
41442766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 41426481 - 41426765
Alignment:
| Q |
19 |
aagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgaggatactttatctg |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| || |
|
|
| T |
41426481 |
aagggactccttaccatgacagtcttttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgagaatactttatttg |
41426580 |
T |
|
| Q |
119 |
actgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactaccactctggtggtcttcg |
218 |
Q |
| |
|
| || ||| ||||| |||||||| ||| ||||||||||||||||| || | | | |||||||| ||||||||||| ||||| |||||| | |
|
|
| T |
41426581 |
gccgatatta-tttcttgttcactctttttaattcaattccgacaaa-tgat-aactttttttcgtggcagcaagtccactaccattctggaggtcttgg |
41426677 |
T |
|
| Q |
219 |
gctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggactcca |
306 |
Q |
| |
|
|||||||||||||||||| | ||||| | || ||||||||||||||| ||||||| |||||| | || |||||||||||||| |
|
|
| T |
41426678 |
actcaaccctaatttgtatagcagtggctatgtttgcctcagtctacttggcacctgggagggcgacgaggatgagatgtggactcca |
41426765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 41448909 - 41449006
Alignment:
| Q |
16 |
cagaagggactccttaccatgatggtcttttcttttttgatgtttacttt-ccccctggatatcccaatggacccccggtatgtggttgaggatactt |
112 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
41448909 |
cagaagagactccttaccataacggtcttttcttttttgatgtttactttcccccctggatatcccaatgtacccccagtatgtggttgaggatactt |
41449006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 306
Target Start/End: Original strand, 41449250 - 41449374
Alignment:
| Q |
182 |
catggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcagg |
281 |
Q |
| |
|
|||||||||| ||||| ||||||||||| || ||| |||||||||||||||||||||| | ||| ||||||| ||||||||||||| ||||||||| || |
|
|
| T |
41449250 |
catggcagcaagtccattaccactctggcggccttgggctcaaccctaatttgtatgcttctgggaaagtatccctcagtctacttgacacctggtttgg |
41449349 |
T |
|
| Q |
282 |
cgacaaaaatcagatgtggactcca |
306 |
Q |
| |
|
| |||| |||||| ||||||||| |
|
|
| T |
41449350 |
caacaaggatcagaaatggactcca |
41449374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 5966 - 6253
Alignment:
| Q |
16 |
cagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgaggatactttat |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
5966 |
cagaagggactccttaccatgacggtcttttcttttttgatgtttactttccccctgaatatcccaatgaacccccggtatgtggttgagaatactttat |
6065 |
T |
|
| Q |
116 |
ctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactaccactctggtggtct |
215 |
Q |
| |
|
|| | || ||| ||||| |||||||| ||| ||||||||||||||||| |||| || | |||||||| ||||||||||| ||||| ||||| |
|
|
| T |
6066 |
ttggcagatatta-tttcttgttcactctttttaattcaattccgacaaa-tggt-cactttttttcgtggcagcaagtccactaccattctggaggtct |
6162 |
T |
|
| Q |
216 |
tcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggactcca |
306 |
Q |
| |
|
| | ||||||||||||||||| | ||||| | || ||||||||||||||| ||||||| |||||| | || |||||||||||||| |
|
|
| T |
6163 |
tggagtcaaccctaatttgtatagcagtggctatgtttgcctcagtctacttggcacctgggagggcgacgaggatgagatgtggactcca |
6253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 17492 - 17205
Alignment:
| Q |
16 |
cagaagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgaggatactttat |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
17492 |
cagaagggactccttaccatgacggtcttttcttttttgatgtttactttccccctgaatatcccaatgaacccccggtatgtggttgagaatactttat |
17393 |
T |
|
| Q |
116 |
ctgactgacgttattttctagttcactcatttaaattcaattccgacaaactggtccannnnnnnncatggcagcaggtccactaccactctggtggtct |
215 |
Q |
| |
|
|| | || ||| ||||| |||||||| ||| ||||||||||||||||| |||| || | |||||||| ||||||||||| ||||| ||||| |
|
|
| T |
17392 |
ttggcagatatta-tttcttgttcactctttttaattcaattccgacaaa-tggt-cactttttttcgtggcagcaagtccactaccattctggaggtct |
17296 |
T |
|
| Q |
216 |
tcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcgacaaaaatcagatgtggactcca |
306 |
Q |
| |
|
| | ||||||||||||||||| | ||||| | || ||||||||||||||| ||||||| |||||| | || |||||||||||||| |
|
|
| T |
17295 |
tggagtcaaccctaatttgtatagcagtggctatgtttgcctcagtctacttggcacctgggagggcgacgaggatgagatgtggactcca |
17205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 7763028 - 7762925
Alignment:
| Q |
19 |
aagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgaggatactttatctg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| ||| |||||||||| |||||||| ||||||||||| |
|
|
| T |
7763028 |
aagggactccttaccatgatggtcttttcttttttgatttatactttccccctgaatatcccgatgaacccccggtacgtggttgaaactactttatctg |
7762929 |
T |
|
| Q |
119 |
actg |
122 |
Q |
| |
|
|||| |
|
|
| T |
7762928 |
actg |
7762925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 184 - 306
Target Start/End: Complemental strand, 7762885 - 7762763
Alignment:
| Q |
184 |
tggcagcaggtccactaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtcaggcg |
283 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||||| || |||||||||| |||| | ||||||||||||||||||||||||||| |||| |
|
|
| T |
7762885 |
tggcagcaactcgactaccactctggtggtcttgggctcaatccaaatttgtatgaaaatggctatgtatgcctcagtctacttaacacctgggttggcg |
7762786 |
T |
|
| Q |
284 |
acaaaaatcagatgtggactcca |
306 |
Q |
| |
|
|| | || |||||||||||||| |
|
|
| T |
7762785 |
acgacgatgagatgtggactcca |
7762763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 21223715 - 21223634
Alignment:
| Q |
197 |
actaccactctggtggtcttcggctcaaccctaatttgtatgcctgtggcaaagtatgcctcagtctacttaacacctggtc |
278 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||| ||| ||||||||||| || || || ||||||||||||||||| |
|
|
| T |
21223715 |
actaccactctggtggacttcgactcaacccaaatttatataattgtggcaaagtttgtcttagcctacttaacacctggtc |
21223634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 1004703 - 1004793
Alignment:
| Q |
19 |
aagggactccttaccatgatggtcttttcttttttgatgtttactttccccctggatatcccaatggacccccggtatgtggttgaggata |
109 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| ||||||| || | ||||||| || ||||||||||||| |||||||||| |
|
|
| T |
1004703 |
aagggactccttaccagcacggtcttttcttttttgatttttacttccctagtaactatcccattgtacccccggtatgtcgttgaggata |
1004793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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