View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18406_low_57 (Length: 318)

Name: NF18406_low_57
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18406_low_57
NF18406_low_57
[»] chr2 (2 HSPs)
chr2 (18-308)||(22829509-22829801)
chr2 (87-308)||(22837293-22837514)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 22829509 - 22829801
Alignment:
Q  18 atacctatcgttcatggtttgatacattcgattggtaaaacgcccctagttgatgagcgggatattagacatcctttctaaaactgataagggtttaaaa 117  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  22829509 atacctatcattcatggtttgatacattcgattggtaaaacacccctagttgatgagcgggatattagacatcctttctaaaattgataagggttaaaaa 22829608  T
Q  118 atgatgtaagaaaagaaatcttaacatgataacatagaaacgtcac--aaaattgttgaaagataaaaatgtaggatgttttgacttgttgaaagaaata 215  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22829609 atgatgtaagagaagaaatcttaacatgataacaaagaaacgtcacaaaaaattgttgaaagataaaaatataggatgttttgacttgttgaaagaaata 22829708  T
Q  216 gatgttgaacttgctgcaaattagctacataaagatgaaaacatggttnnnnnnntaaatgatgaaaaatcgatgcagctcccctttgctact 308  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||       |||||||||||||||||||||||| ||| |||||||||    
T  22829709 gatgttgaacctgctgcaaattagctacatatagatgaaaacatggttaaaaaaataaatgatgaaaaatcgatgcagcacccttttgctact 22829801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 87 - 308
Target Start/End: Original strand, 22837293 - 22837514
Alignment:
Q  87 catcctttctaaaactgataagggtttaaaaatgatgtaagaaaagaaatcttaacatgataacatagaaacgtcacaaaattgttgaaagataaaaatg 186  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  22837293 catcctttctaaaactgataagggtttaaaaatgatgtaagagaagaaatcttaacatgataacaaagaaacgtcacaaaattgttgaaatataaaaatg 22837392  T
Q  187 taggatgttttgacttgttgaaagaaatagatgttgaacttgctgcaaattagctacataaagatgaaaacatggttnnnnnnntaaatgatgaaaaatc 286  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||       ||||| ||||| ||||    
T  22837393 taggatgttttgacttgttgaaagaaatagatgttgaacctgctgcaaattagctacatatagatgaaatcatggttgaaaaaataaattatgaataatc 22837492  T
Q  287 gatgcagctcccctttgctact 308  Q
    |||| ||| ||| |||||||||    
T  22837493 gatgtagcacccttttgctact 22837514  T

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