View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_60 (Length: 311)
Name: NF18406_low_60
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 40708302 - 40708609
Alignment:
| Q |
1 |
cactttaggttgtagtttaatttcaattatttggaaggtattttatg-------------gatcgtgtacctcttatacactctaatttactagtgaatg |
87 |
Q |
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| T |
40708302 |
cactttaggttgtagtttaatttcaattagttggaaggtatattatgtacttgttatatggatcgtgtacctcttatacactctaatttactagtgaatg |
40708401 |
T |
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| Q |
88 |
aaatttttataaccaattaattagagataaatatttgtctccactatggtttctatagtaaattatagtgaggcaacaatattcatttgacagcgtgaat |
187 |
Q |
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| T |
40708402 |
aaatttttataaccaattaattagagataaatatttgtctccactatggtttctataataaattatagtgaggcaacaatattcatttgacagcgtgaat |
40708501 |
T |
|
| Q |
188 |
ggggagacgtcaatggctctgctagggtttccaaagcatcagctccgtctatccatttgagtttgacgataattgctttcatctttggtgattgtgatat |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40708502 |
ggggagacgtcaatggctctgctagggtttccaaagcatcagctccgtccatccatttgagtttgacgataattgctttcatctttggtgattgtgatat |
40708601 |
T |
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| Q |
288 |
agcttcat |
295 |
Q |
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|||||||| |
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| T |
40708602 |
agcttcat |
40708609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 40723018 - 40723118
Alignment:
| Q |
54 |
gtacctcttatacactctaatttactagtgaatgaaatttttataaccaattaattagagataaatatttgtctccactatggtttctatagtaaattat |
153 |
Q |
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||||||||| ||| || ||||||||| ||||||||| | ||||||||||||||||||||| |||||| |||||||| | ||||| |||| |||||||| |
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| T |
40723018 |
gtacctcttgtacgct-taatttactcttgaatgaaaatcttataaccaattaattagagacaaatatatgtctccattgcggtttatataataaattat |
40723116 |
T |
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| Q |
154 |
ag |
155 |
Q |
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|| |
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| T |
40723117 |
ag |
40723118 |
T |
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