View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_61 (Length: 311)
Name: NF18406_low_61
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 296
Target Start/End: Complemental strand, 35341784 - 35341495
Alignment:
| Q |
14 |
gaacctctacacaggggcggatccaagatttggtttttggtccaatgaaatttaagacaatgtactatttcatccaaattaacagttttaataatagttt |
113 |
Q |
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| T |
35341784 |
gaacctctacacaggggcggatccaagatttggtttttggtccaatgaaatttaagacaatgtactatttcatccaaattaacagttttaataatagttt |
35341685 |
T |
|
| Q |
114 |
tatttggaccagttttcttaaccgaagtttatttgtgacgctaattagaacaaaatgggatgtcaacttcctctaacatttcatttttatagacatcctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35341684 |
tatttggaccagttttcttaaccgaagtttatttgtgacgctaattagaacaaaatgggatgtcaacttcctctaacatttcatttttatagacatcctt |
35341585 |
T |
|
| Q |
214 |
cgtatgtaaatttatttttggaaaaaatctagtgtggcttt-------agccacaccaaggtttatgatagatccacccgtgcctctaat |
296 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35341584 |
cgtatgtaaatttatttttggaaaaaatctagcgtggctttagcctaaagccacaccaaggtttatgatagatccacccgtgcctctaat |
35341495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 4374085 - 4374041
Alignment:
| Q |
180 |
cttcctctaacatttcatttttatagacatccttcgtatgtaaat |
224 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
4374085 |
cttcttctaacatttcatttttatagacatccttcatatgtaaat |
4374041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 32103994 - 32104040
Alignment:
| Q |
178 |
aacttcctctaacatttcatttttatagacatccttcgtatgtaaat |
224 |
Q |
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|||||| || ||||||||||||||||||||||||||| ||||||||| |
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| T |
32103994 |
aacttcttcaaacatttcatttttatagacatccttcatatgtaaat |
32104040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 7116544 - 7116497
Alignment:
| Q |
174 |
tgtcaacttcctctaacatttcatttttatagacatccttcgtatgta |
221 |
Q |
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||||||||||||||||||||||||||||||| | | ||||||||||| |
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| T |
7116544 |
tgtcaacttcctctaacatttcatttttataaaaaagcttcgtatgta |
7116497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 24912212 - 24912260
Alignment:
| Q |
175 |
gtcaacttcctctaacatttcatttttatagacatccttcgtatgtaaa |
223 |
Q |
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||||| || |||||||| || ||||||||||||||||||| |||||||| |
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| T |
24912212 |
gtcaagtttctctaacactttatttttatagacatccttcatatgtaaa |
24912260 |
T |
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