View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_66 (Length: 295)
Name: NF18406_low_66
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 37045749 - 37046014
Alignment:
| Q |
11 |
catcatcagaaacataacaagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtggttcaagtacagg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37045749 |
catcatcagaaacataacaagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtggttcaagtacagg |
37045848 |
T |
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| Q |
111 |
atctgctgttgtcacaaataaatccacacgtggaagctcatgcactctattaggatnnnnnnnnnnnnnnnntcagcacaagacttgagaaactaattag |
210 |
Q |
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| T |
37045849 |
atctgctgttgtcacaaacaaatccacacgtggaagctcatgcactctattaggataaaaaataacaaaaaatcagcacaagacttgagaaactaattag |
37045948 |
T |
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| Q |
211 |
caagagaaatggttttttgcaatcaaatttagacaacttttgcgaaaactttttaaatggttaatg |
276 |
Q |
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| T |
37045949 |
caagagaaatggttttttgcaatcaaatttagacaacttttgcgaaaactttttaaatggttaatg |
37046014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 37036409 - 37036549
Alignment:
| Q |
11 |
catcatcagaaacataacaagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtggttcaagtacagg |
110 |
Q |
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| T |
37036409 |
catcatcagaaacataacaagctagcttattagctggataatcaagagccaatagagacaaaacagtgttcaatgtgatgattggtggttcaagtacagg |
37036508 |
T |
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| Q |
111 |
atctgctgttgtcacaaataaatccacacgtggaagctcat |
151 |
Q |
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| T |
37036509 |
atctgctgttgtcacaaacaaatccacacatggaagctcat |
37036549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 37011719 - 37011836
Alignment:
| Q |
11 |
catcatcagaaacataacaagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtggttcaagtacagg |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| | || || || || |||| |||||| ||||||||||| || || || |
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| T |
37011719 |
catcatcagaaacataacaagctagcttattagcaggataatcaagtgccaacaatgataacactgtattcactgtgattattggtggttctagcactgg |
37011818 |
T |
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| Q |
111 |
atctgctgttgtcacaaa |
128 |
Q |
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|||||||||||| ||||| |
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| T |
37011819 |
atctgctgttgttacaaa |
37011836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 37027809 - 37027926
Alignment:
| Q |
11 |
catcatcagaaacataacaagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtggttcaagtacagg |
110 |
Q |
| |
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|||||||||||||||| || |||||||| || |||||||||||||||||||| | ||||| || || |||| |||||| ||||||||||| || | || |
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| T |
37027809 |
catcatcagaaacatagcatgctagcttgtttgctggataatcaagtgccaacaatgacaacactgtattcactgtgattattggtggttctagccctgg |
37027908 |
T |
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| Q |
111 |
atctgctgttgtcacaaa |
128 |
Q |
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|||||| ||||||||||| |
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| T |
37027909 |
atctgccgttgtcacaaa |
37027926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 17656272 - 17656146
Alignment:
| Q |
11 |
catcatcagaaacataacaagctagcttattagctggataatcaagtgccaatagagacaaaacagtgttcaatgtgatgattggtggttcaagtacagg |
110 |
Q |
| |
|
||||||||||||| |||||||||||||| | || ||| ||||||||||| ||||| || ||||||||||| | ||||||||||| |||||| | || |
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| T |
17656272 |
catcatcagaaacgtaacaagctagcttgtgagatgggtaatcaagtgctaatagtgataaaacagtgtttattgtgatgattgctggttctaactcatc |
17656173 |
T |
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| Q |
111 |
atctgctgttgtcacaaataaatccac |
137 |
Q |
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|||||||||||||||||||||||||| |
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| T |
17656172 |
gtctgctgttgtcacaaataaatccac |
17656146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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