View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18406_low_71 (Length: 288)

Name: NF18406_low_71
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18406_low_71
NF18406_low_71
[»] chr2 (4 HSPs)
chr2 (114-279)||(41282855-41283019)
chr2 (125-279)||(41282649-41282803)
chr2 (160-280)||(1233749-1233870)
chr2 (114-175)||(33361052-33361111)
[»] scaffold0178 (2 HSPs)
scaffold0178 (114-276)||(18486-18646)
scaffold0178 (160-281)||(19102-19226)
[»] chr5 (1 HSPs)
chr5 (113-256)||(120077-120218)
[»] chr3 (7 HSPs)
chr3 (113-177)||(8922888-8922950)
chr3 (113-177)||(41325826-41325888)
chr3 (113-177)||(50107572-50107634)
chr3 (122-177)||(1772880-1772933)
chr3 (114-177)||(8923629-8923690)
chr3 (114-177)||(23514488-23514549)
chr3 (114-177)||(34329130-34329191)
[»] chr4 (2 HSPs)
chr4 (114-182)||(5469961-5470027)
chr4 (115-159)||(45620874-45620918)
[»] chr8 (2 HSPs)
chr8 (114-177)||(38443039-38443100)
chr8 (114-158)||(38443618-38443662)
[»] chr7 (1 HSPs)
chr7 (133-177)||(48204975-48205017)
[»] chr1 (1 HSPs)
chr1 (114-177)||(1764521-1764582)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 8e-64; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 114 - 279
Target Start/End: Complemental strand, 41283019 - 41282855
Alignment:
Q  114 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaacct 213  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||  |||||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  41283019 catctttactccatttaagtttgctcaatttacatcatttaccatc--atggatgtgtgacatgtggaataaattaaacaaagggttgagattaaaacct 41282922  T
Q  214 tagaaaaaacaaacttgttactctcttgtatctgaaacaacacg-ctgcctcctttcttcttcttct 279  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  41282921 tagaaaaaacaaacttgttactctcttgtatctgaaacaacacgcctgccacctttcttcttcttct 41282855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 125 - 279
Target Start/End: Original strand, 41282649 - 41282803
Alignment:
Q  125 catttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaaccttagaaaaaa-c 223  Q
    ||||||| ||||||| |||||||||||||||||||  || ||||||||| ||| |||||||||| |||||||| |||  ||||||| | ||||||||| |    
T  41282649 catttaagtttgctccatttacaccatttaccatc--atagatgtgtgatatgtggaataaattgaacaaaggattgagattaaaaacatagaaaaaaac 41282746  T
Q  224 aaacttgttactctcttgtatctgaaacaacac-gctgcctcctttcttcttcttct 279  Q
    || ||| ||||| ||||||||||||||||||||   |||||||| ||||||||||||    
T  41282747 aatcttattactttcttgtatctgaaacaacacatttgcctcctgtcttcttcttct 41282803  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 280
Target Start/End: Original strand, 1233749 - 1233870
Alignment:
Q  160 tcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaaccttagaaaaaacaaacttgttactctcttgtatctgaaacaacac-gc 258  Q
    |||||||||||||||| | || | |||| ||| ||| ||||   ||||||||||||||||||||||||| |||  ||||||||||| ||| ||||||  |    
T  1233749 tcatggatgtgtgacacgtggcaaaaataaaataaatggttaagattaaaaccttagaaaaaacaaactagttcttctcttgtatccgaagcaacacacc 1233848  T
Q  259 tgcctcctttcttcttcttctc 280  Q
     | |||||||||||||||||||    
T  1233849 agtctcctttcttcttcttctc 1233870  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 33361052 - 33361111
Alignment:
Q  114 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgaca 175  Q
    ||||||| |||||||||  ||||||||||||| ||||||||||   ||||||||||||||||    
T  33361052 catctttgctccatttacctttgctcaatttataccatttacc--ttcatggatgtgtgaca 33361111  T

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Target: scaffold0178 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 114 - 276
Target Start/End: Original strand, 18486 - 18646
Alignment:
Q  114 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaacct 213  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||| ||  ||||||||||    
T  18486 catctttactccatttaagtttgttcaatttacaccatttaccatc--atggatgtgtgacatgtggaataaattaaacaaagggctgagattaaaacct 18583  T
Q  214 tagaaaaaacaaacttgttactctcttgtatctgaaacaacacgctgcctcctttcttcttct 276  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  18584 tagaaaaaacaaacttgttactctcttgtagctgaaacaacacgccgcctcctttcttcttct 18646  T

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Target: scaffold0178; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 281
Target Start/End: Complemental strand, 19226 - 19102
Alignment:
Q  160 tcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaaccttagaa--aaaacaaacttgttactctcttgtatctgaaacaacacg 257  Q
    |||||||||||||||||| | |||||||||||||||||| ||  ||||||| |||||||  ||||||| ||| |||||||||||||||| |||||| ||     
T  19226 tcatggatgtgtgacatgtgtaataaattaaacaaagggctgagattaaaaacttagaaaaaaaacaatcttattactctcttgtatctaaaacaagaca 19127  T
Q  258 c-tgcctcctttcttcttcttctca 281  Q
    | |||||||| ||||||||||||||    
T  19126 cttgcctcctgtcttcttcttctca 19102  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 256
Target Start/End: Original strand, 120077 - 120218
Alignment:
Q  113 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaacc 212  Q
    |||||||| |||||||||  ||| |||||||||| ||||||  ||  | || |||| |||||||  |||| |||| ||| ||| |||||  ||||||||     
T  120077 tcatctttgctccatttagctttcctcaatttaccccattt--caagttatagatgcgtgacatatggaaaaaataaaataaatggttgagattaaaact 120174  T
Q  213 ttagaaaaaacaaacttgttactctcttgtatctgaaacaacac 256  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  120175 ttagaaaaaacaaacttgttcctctcttgtatctgaaacaacac 120218  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 8922888 - 8922950
Alignment:
Q  113 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 177  Q
    ||||||||||||||||||  |||||||||||||| ||||||| ||  ||||||||||||||||||    
T  8922888 tcatctttactccatttaggtttgctcaatttaccccatttatca--tcatggatgtgtgacatg 8922950  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 41325826 - 41325888
Alignment:
Q  113 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 177  Q
    ||||||||||||||||||  |||||||||||||| ||||||| ||  ||||||||||||||||||    
T  41325826 tcatctttactccatttaggtttgctcaatttaccccatttatca--tcatggatgtgtgacatg 41325888  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 50107572 - 50107634
Alignment:
Q  113 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 177  Q
    ||||||||||| ||||||  |||||||||||||| ||||||| ||  ||||||||||||||||||    
T  50107572 tcatctttactacatttaggtttgctcaatttaccccatttatca--tcatggatgtgtgacatg 50107634  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 1772880 - 1772933
Alignment:
Q  122 ctccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 177  Q
    |||||||||| |||||||||||||| ||||||||  | |||||||| |||||||||    
T  1772880 ctccatttaagtttgctcaatttaccccatttac--tatcatggatatgtgacatg 1772933  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 8923690 - 8923629
Alignment:
Q  114 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 177  Q
    ||||||| ||||||||   ||||||| |||||| ||||||||||  ||||||||||||||||||    
T  8923690 catctttgctccatttgggtttgctccatttaccccatttacca--tcatggatgtgtgacatg 8923629  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 23514549 - 23514488
Alignment:
Q  114 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 177  Q
    ||||||| ||||||||   |||||||||||||| ||||||||  | ||||||||||||||||||    
T  23514549 catctttgctccatttgcctttgctcaatttaccccatttac--tatcatggatgtgtgacatg 23514488  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 34329191 - 34329130
Alignment:
Q  114 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 177  Q
    ||||||| || ||||||  |||||||||||||| ||||||||  | ||||||||||||||||||    
T  34329191 catctttgcttcatttatttttgctcaatttactccatttac--tatcatggatgtgtgacatg 34329130  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 5470027 - 5469961
Alignment:
Q  114 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaa 182  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||  | |||||||||||||||| ||||    
T  5470027 catctttgctccatttaagtttgctcaatttatcccatttacca--ttatggatgtgtgacatgtggaa 5469961  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 45620874 - 45620918
Alignment:
Q  115 atctttactccatttaaatttgctcaatttacaccatttaccatc 159  Q
    |||||| ||||||||||||||||||||||||   |||||||||||    
T  45620874 atctttgctccatttaaatttgctcaatttatctcatttaccatc 45620918  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 38443039 - 38443100
Alignment:
Q  114 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 177  Q
    ||||||| |||||||||| | ||||| |||||| ||||||||||  ||||||||||||||||||    
T  38443039 catctttgctccatttaagtctgctccatttaccccatttacca--tcatggatgtgtgacatg 38443100  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 38443662 - 38443618
Alignment:
Q  114 catctttactccatttaaatttgctcaatttacaccatttaccat 158  Q
    ||||||| |||||||||| ||||||| |||||| |||||||||||    
T  38443662 catctttgctccatttaagtttgctccatttaccccatttaccat 38443618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 48205017 - 48204975
Alignment:
Q  133 tttgctcaatttacaccatttaccatctcatggatgtgtgacatg 177  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||    
T  48205017 tttgctccatttacaccatttacca--tcatggatgtgtgacatg 48204975  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 1764521 - 1764582
Alignment:
Q  114 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 177  Q
    ||||||| |||||||||| |||||||||||||| | ||||| ||  |||||||||| |||||||    
T  1764521 catctttgctccatttaagtttgctcaatttaccctatttatca--tcatggatgtatgacatg 1764582  T

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