View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_73 (Length: 282)
Name: NF18406_low_73
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 12 - 280
Target Start/End: Original strand, 40001323 - 40001591
Alignment:
| Q |
12 |
aagaatatggcaaagaaaatatggattgagtgaggctgagataatgtcagctaggtaagggaagttaaacaagtaatgaaggttaaattatgatgaatgg |
111 |
Q |
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| T |
40001323 |
aagaaaatggcaaagaaaatatggattgagtgaggctgagataatgtcagctaggtaagggaagttaaacaagtaatgaaggttaaattatgatgaatgg |
40001422 |
T |
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| Q |
112 |
aagaagttttgatcttttaaagacaatgacttgatcatggagagaagatattggaagaccatcctctcctttctacccacttttaaaatctttcttattt |
211 |
Q |
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| T |
40001423 |
aagaagttttgatcttttaaagacaatgacttgatcatggagagaagatattggaagaccatcctctcctttctacccacttttaaaatctttcttattt |
40001522 |
T |
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| Q |
212 |
ctacgaaatccatagctcctcatatcatatttacttaagacgcacaacttaacagggaaaataaagact |
280 |
Q |
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| T |
40001523 |
ctacgaaatccatagctcctcatatcatatttacttaagacgcacaacttaacagggaaaataaagact |
40001591 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 49385091 - 49385015
Alignment:
| Q |
202 |
tttcttatttctacgaaatccatagctcctcatatcatatttacttaagacgcacaacttaacagggaaaataaaga |
278 |
Q |
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| T |
49385091 |
tttctcatttctattaaatcactagttcttcatatcacatttacttaaggctcacaacttaatagtgaaaataaaga |
49385015 |
T |
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