View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18406_low_76 (Length: 258)

Name: NF18406_low_76
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18406_low_76
NF18406_low_76
[»] chr4 (2 HSPs)
chr4 (16-247)||(6612736-6612967)
chr4 (17-189)||(27014988-27015160)
[»] scaffold0381 (1 HSPs)
scaffold0381 (17-189)||(4623-4795)
[»] chr8 (1 HSPs)
chr8 (17-222)||(29383150-29383355)
[»] chr3 (2 HSPs)
chr3 (17-126)||(12530143-12530252)
chr3 (80-182)||(54565450-54565552)
[»] chr2 (1 HSPs)
chr2 (27-245)||(45010009-45010227)
[»] chr1 (2 HSPs)
chr1 (32-118)||(41327610-41327696)
chr1 (32-118)||(41337841-41337927)
[»] chr6 (4 HSPs)
chr6 (34-118)||(20916428-20916512)
chr6 (41-118)||(20916791-20916868)
chr6 (77-140)||(17395936-17395999)
chr6 (32-118)||(20926361-20926447)
[»] chr5 (1 HSPs)
chr5 (26-174)||(22789992-22790140)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 6612736 - 6612967
Alignment:
Q  16 aaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggtttt 115  Q
    |||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||    
T  6612736 aaaatatctccttcagcacttcaatccggacgtactcttcttaagtgagacactagtatcccgaaataaaattgaagttttacgttacttgcttggtttt 6612835  T
Q  116 gattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattgcacgcttgttaattattctaataatc 215  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6612836 gattcctgtttttccgttgattgcaccggtaggagtggtggccttgctttattttggcgtacctcttctaattgcatgcttgttaattattctaataatc 6612935  T
Q  216 atattacagttgaattttttgattctgttcat 247  Q
    ||||||||||||||||||||||||||||||||    
T  6612936 atattacagttgaattttttgattctgttcat 6612967  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 27015160 - 27014988
Alignment:
Q  17 aaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttg 116  Q
    |||||||||||||| ||||||||||| ||| ||||||| |||||||||||| | ||    |||||||||||||| ||||| || || ||||| |||||||    
T  27015160 aaatatctcgttcgacacttcaatccagacatactctttttaagtgagacattggttcgccgaaataaaattgaagtttttcgatatttgctcggttttg 27015061  T
Q  117 attcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattg 189  Q
    |||| |||||||| ||||||||||||  ||| || ||||| |||||||||||  |||| || |||||||||||    
T  27015060 attcttgtttttctgttgattgcaccaatagaagcggtggtcttgctttattccggcgcacttcttctaattg 27014988  T

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Target: scaffold0381 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 4623 - 4795
Alignment:
Q  17 aaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttg 116  Q
    |||||||||||||| ||||||||||| ||| ||||||| |||||||||||| | ||    |||||||||||||| ||||| || || ||||| |||||||    
T  4623 aaatatctcgttcgacacttcaatccagacatactctttttaagtgagacattggttcgccgaaataaaattgaagtttttcgatatttgctcggttttg 4722  T
Q  117 attcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattg 189  Q
    |||| |||||||| ||||||||||||  ||| || ||||| |||||||||||  |||| || |||||||||||    
T  4723 attcttgtttttctgttgattgcaccaatagaagcggtggtcttgctttattccggcgcacttcttctaattg 4795  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 29383150 - 29383355
Alignment:
Q  17 aaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttg 116  Q
    ||||| ||||||||  ||||||||  |||| |||| || |||||||||||||||||    |||||||||||||| | ||| ||||| ||||| |||||||    
T  29383150 aaatacctcgttcgatacttcaatatggacctactatttttaagtgagacactagtccaccgaaataaaattgaagatttacgttatttgctgggttttg 29383249  T
Q  117 attcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattgcacgcttgttaattattctaataatca 216  Q
    |||| || ||||  |||||| |||||| |||  | || || ||||||||||| ||||| || |||  | ||||    |||||||||| ||||||||||||    
T  29383250 attcttgcttttatgttgatcgcaccggtagtggaggcggtcttgctttattgtggcgcacttctcttcattgtcaacttgttaatttttctaataatca 29383349  T
Q  217 tattac 222  Q
     |||||    
T  29383350 cattac 29383355  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 12530252 - 12530143
Alignment:
Q  17 aaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatca-cgaaataaaattgacgttttccgttacttgcttggtttt 115  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||| ||||| | || ||| |||||||||||||| | ||| || || ||||| ||||||    
T  12530252 aaatatctcgttcgacacttcaatccagacgtactctttttaagtcagacattggt-tcaccgaaataaaattgaagcttttcgatatttgctcggtttt 12530154  T
Q  116 gattcctgttt 126  Q
    ||||| |||||    
T  12530153 gattcttgttt 12530143  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 54565552 - 54565450
Alignment:
Q  80 aataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacct 179  Q
    ||||||||||| | | | |||||| |||||| ||||||||  |||||||| |||||||| || | ||| |||||||||||||| |||||||||||| |||    
T  54565552 aataaaattgaagctctacgttacgtgcttgattttgatttttgtttttctgttgattgtactggtagaagtggtggccttgcattattttggcgtgcct 54565453  T
Q  180 ctt 182  Q
    |||    
T  54565452 ctt 54565450  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 245
Target Start/End: Original strand, 45010009 - 45010227
Alignment:
Q  27 ttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgattcctgttt 126  Q
    |||| ||||| ||||||||| | |||||||||||||||||  ||||    |||||||||||||| |  ||   |||||| |||||||||||||| ||| |    
T  45010009 ttcggcactttaatccggacatcctcttcttaagtgagactttagtccatcgaaataaaattgaagaattattttacttacttggttttgattcttgtat 45010108  T
Q  127 ttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattgcacgcttgttaattattctaataatcatattacagtt 226  Q
     || |||||  |||| |  ||  |||| || ||||| |||||||||| |    |||||| |||||  |||||| ||| |||||||||||||||||| |||    
T  45010109 ctcagttgaccgcactggaagaggtgggggtcttgccttattttggcatcatacttctagttgcaatcttgttgatttttctaataatcatattactgtt 45010208  T
Q  227 gaattttttgattctgttc 245  Q
    ||| || ||||||||||||    
T  45010209 gaaattattgattctgttc 45010227  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 41327610 - 41327696
Alignment:
Q  32 cacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgat 118  Q
    ||||||||||||||| | |||||||||||||||| | ||||    |||||||||||||| | ||| |||||||||||||||||||||    
T  41327610 cacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttgat 41327696  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 41337841 - 41337927
Alignment:
Q  32 cacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgat 118  Q
    ||||||||||||||| | |||||||||||||||| | ||||    |||||||||||||| | ||| |||||||||||||||||||||    
T  41337841 cacttcaatccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttgat 41337927  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 20916428 - 20916512
Alignment:
Q  34 cttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgat 118  Q
    |||||| |||||| | |||||||||||||||| | ||||    |||||||||||||| | ||| |||||||||||||||||||||    
T  20916428 cttcaacccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttgat 20916512  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 20916791 - 20916868
Alignment:
Q  41 ccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgat 118  Q
    |||||| | |||||||||||||||| | ||||    |||||||||||||| | ||| |||||||||||||||||||||    
T  20916791 ccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttgat 20916868  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 17395999 - 17395936
Alignment:
Q  77 cgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgca 140  Q
    |||||||||||||| ||||| ||| || ||||||||||| |||| ||||||||  |||||||||    
T  17395999 cgaaataaaattgaagtttttcgtaacatgcttggtttttattcttgtttttcttttgattgca 17395936  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 20926361 - 20926447
Alignment:
Q  32 cacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgat 118  Q
    ||||||||||| ||| | |||||||||||||||| | ||||    |||||||||||||| | ||  ||||| |||||||||||||||    
T  20926361 cacttcaatccagacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagattgacgttatttgcttggttttgat 20926447  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 22790140 - 22789992
Alignment:
Q  26 gttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgattcctgtt 125  Q
    ||||| |||||||||||||   || | ||||||||||||||| ||||    || ||||||||||| | ||| ||| || |||||||||||||||  || |    
T  22790140 gttcggcacttcaatccggttctattattcttaagtgagacattagtccaccgtaataaaattgaagctttacgtcacctgcttggttttgattgatgct 22790041  T
Q  126 tttccgttgattgcaccgctaggagtggtggccttgctttattttggcg 174  Q
    |||| ||||||||    | ||| |||||||||||||| |||||||||||    
T  22790040 tttctgttgattgttatggtagaagtggtggccttgcattattttggcg 22789992  T

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