View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_77 (Length: 254)
Name: NF18406_low_77
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_77 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 386138 - 385959
Alignment:
| Q |
50 |
atcccattcttcatgcatgactcaaacaactgtcggattataaaattatttgttctgatacctgacgaacccatgaaacgcagccacctcaaagcaagat |
149 |
Q |
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| T |
386138 |
atcccattcttcatgcatgactcaaacaactgtcggattataaaattatttgttctgatacctgacgaacccatgaaacgcagccacctcaaagcaagat |
386039 |
T |
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| Q |
150 |
caaccgaaccttccttgatatacaccatcaaaacatcactagctgtcacatccacagaatatcccatggtcttcatttca |
229 |
Q |
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| T |
386038 |
caaccgaaccttccttgatatacaccatcaaaacatcactagctgtcacatccacagaatatcccatcgtcttcatttca |
385959 |
T |
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Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 38729404 - 38729583
Alignment:
| Q |
50 |
atcccattcttcatgcatgactcaaacaactgtcggattataaaattatttgttctgatacctgacgaacccatgaaacgcagccacctcaaagcaagat |
149 |
Q |
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|||||||| |||||||| |||||||||||||| | ||||||||||||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||| |
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| T |
38729404 |
atcccatttttcatgcacgactcaaacaactgcctgattataaaattattggttctgatccctgaggaacccatgaaacgtagccatctcaaagcaagat |
38729503 |
T |
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| Q |
150 |
caaccgaaccttccttgatatacaccatcaaaacatcactagctgtcacatccacagaatatcccatggtcttcatttca |
229 |
Q |
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| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38729504 |
cgactgaaccttccttgatatacaccatcaaaacatcactagctgtcacatccacagaatatcccattgtcttcatttca |
38729583 |
T |
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