View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_78 (Length: 253)
Name: NF18406_low_78
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 46581800 - 46582039
Alignment:
| Q |
9 |
cgaagaaaatagtatgacagtgattctattctggtgaagtaaatatgtgagaaattnnnnnnnnnntatcaaagaatacaaaattcttaaaccctttctc |
108 |
Q |
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| T |
46581800 |
cgaaaaaaatagtatgacagtgattctattctagtgaagtaaatatgtgagaaattaaaaaaaaaa-atcaaagaatacaaaattcttaaaccctttctc |
46581898 |
T |
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| Q |
109 |
tttctaaagaaataagcaaagcagatatttctttatatctgctatataatataagtcgtcctttacaaagagaatttcagaatgagaatgtctcataaca |
208 |
Q |
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| T |
46581899 |
tttctaaagaaataagcaaagcagatatttctttatatctgctatataatataagtcatcctttacaacgagaatttcagaatgagaatgtctcataaca |
46581998 |
T |
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| Q |
209 |
acatctcaccaagcatccaaataataataacatgcattctt |
249 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |
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| T |
46581999 |
acatctcatcaagcatccaaataataataacatgcattctt |
46582039 |
T |
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