View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_79 (Length: 251)
Name: NF18406_low_79
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_79 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 94016 - 94224
Alignment:
| Q |
20 |
accactcataataaaaccccattacatccaaaaaattatccagaaaaagtatacactaaggattttccatacacaactcaataaaatgcattaatgttaa |
119 |
Q |
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| T |
94016 |
accactcataataaaaccccattacatccaaaaaattatccagaaaaagtatacactaaggattttccatacacaactcaataaaatgcattaatgttaa |
94115 |
T |
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| Q |
120 |
gaaatcctttgagaatgcctttaccacaaaataaattttccagaccatgaatatcataagaatcctatgcagaatcctgtgctaccaattataaccatac |
219 |
Q |
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| T |
94116 |
gaaatcctttgagaatgcctttaccacaaaataaattttccagaccatgaataacata------------agaatcctgtgctaccagttataaccatac |
94203 |
T |
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| Q |
220 |
aaaataccttccatgcttcat |
240 |
Q |
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| T |
94204 |
aaaataccttccatgcttcat |
94224 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 37221088 - 37221035
Alignment:
| Q |
127 |
tttgagaatgcctttaccacaaaataaattttccagaccatgaatatcataaga |
180 |
Q |
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| T |
37221088 |
tttgggaataccttcagcaccaaataaattttccaaaccatgaatatcataaga |
37221035 |
T |
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