View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_80 (Length: 251)
Name: NF18406_low_80
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_80 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 35338039 - 35338276
Alignment:
| Q |
14 |
gaatggaataacaatacaaataaaacaaaagaacaaatattttaaaaaatgtttgcgttcgcgcaacattaatgtttttgatgtatgtttgtctacaatg |
113 |
Q |
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| T |
35338039 |
gaatggaataacaatacaaataaaacaaaagaacaaatattttaaaaaatgtttgtgttcgcgcaacattaatgtttttgatgtatgtttgtctacaatg |
35338138 |
T |
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| Q |
114 |
caagattgcattaaacaatgttttaaaaatctgaccagagattgaactagccaatgagatctctaagtcatggttcaatctgtccaactatggctaaaca |
213 |
Q |
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| T |
35338139 |
caagattgcattaaacaatgttttaaaaatctgatcagagattgaactagctaatgagatctctaagtcatggttcaatcggtccaactatggctaaaca |
35338238 |
T |
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| Q |
214 |
tgaccaataaataaaaaataacatcggcataaaacctt |
251 |
Q |
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|||| |||||||||||||||||||| |||||||||||| |
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| T |
35338239 |
tgacaaataaataaaaaataacatcagcataaaacctt |
35338276 |
T |
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