View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_86 (Length: 242)
Name: NF18406_low_86
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_86 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 35338281 - 35338506
Alignment:
| Q |
1 |
aaaatgcaacaatgattgaagaggaaaaagaaaatagaatgtatttgaatgaattctcaccaggggcaatgtagccataagaaccaacaacagcagacat |
100 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35338281 |
aaaatgcaacaatgattgaagatgaaaaataaaatagaatgtgtttggatgaattctcaccaggggcaatgtagccataagaaccaacaacagcagacat |
35338380 |
T |
|
| Q |
101 |
tgatttagaccttgagatatcaactagcttagccaaaccaaaatcaccaacatgagcttcaaattcatggtcaataagtatgttattggacttgatatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35338381 |
tgatttagaccttgagatatcaactagcttagccaaaccaaaatcaccaacatgagcttcaaattcatggtcaataagtatgttattggacttgatatca |
35338480 |
T |
|
| Q |
201 |
cggtggataattctaggcttgcaatc |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
35338481 |
cggtggataattctaggcttgcaatc |
35338506 |
T |
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