View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18406_low_88 (Length: 241)
Name: NF18406_low_88
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_88 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 46582140 - 46582366
Alignment:
| Q |
1 |
caatctaacctaccaatccaaacaaccaactactaagaacttgttctagtttctgtaaaaggaaacacaat-taatg-tcatcatcttcatcgtcgtcaa |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||||||||| |
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| T |
46582140 |
caatctaacctaccaatccaaacaaccaactactaagaacttgttctagtttctgtaaaaggaaacacaatgtcatcatcttcatcttcatcgtcgtcaa |
46582239 |
T |
|
| Q |
99 |
tgccagtgtatcaacaacagcctcctccatttacagtgacacaaccatcctaccatggtgcatcacaacatgactccattggtcctctcattggagttct |
198 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46582240 |
tgccagtgtatcaacaacagcctcctccgtttacagtgacacaaccatcctaccatggtgcatcacaacatgactccattggtcctctcattggagttct |
46582339 |
T |
|
| Q |
199 |
cgtagtgataattgtgttgggtataat |
225 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
46582340 |
cgtagtgataattgtgttgggtataat |
46582366 |
T |
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