View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18406_low_93 (Length: 238)
Name: NF18406_low_93
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_93 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 41859725 - 41859503
Alignment:
| Q |
1 |
ccggtccattccaacaaccccataaccgcagtgaaaaactcggaaccactctcagatttcatatcaaacatatcacgcgacaacattaaatttccaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41859725 |
ccggtccattccaacaaccccataaccgcagtgaaaaactcggaaccactctcagatttcatatcaaacatatcacgcgacaacattaaatttccaaaca |
41859626 |
T |
|
| Q |
101 |
agttaaaactcatgaaaaatacaaaacgtgacacatgaagtccacgaccagcttctaactcacgtgcttcttttgcaatccatgtgagcatgtcgtttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41859625 |
agttaaaactcatgaaaaatacaaaacgtgacacatgaagtccacgaccagcttctaactcacgtgcttcttttgcaatccatgtgagcatgtcgtttac |
41859526 |
T |
|
| Q |
201 |
acatctacgacgtatggaagctg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
41859525 |
acatctacgacgtatggaagctg |
41859503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University