View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18406_low_97 (Length: 235)
Name: NF18406_low_97
Description: NF18406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18406_low_97 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1184958 - 1184737
Alignment:
| Q |
1 |
agtgctaaaactctgaccaagaagaaatatatttcatccttaatgtaactggacaatagatataactagctttatgatataaaatgtcacagtataagtt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
1184958 |
agtgctaaaactttgaccaagaagaaatatatttcatccttaatgtaattgggcaatagatataattagctttatgatacaaaatgtcacagtataagtt |
1184859 |
T |
|
| Q |
101 |
agtgggattgcattacttacttcaggatgttggtgcgggataattgaagctttttcactgcatcaaaaatttcctctcgcacatgtgaaatcnnnnnnnc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
1184858 |
agtgggattgcattacttacttcaggatgtcggtgcgggacaattgaagctttttcactgcatcaaaaattccctctggcacatgtgaaatctttttttc |
1184759 |
T |
|
| Q |
201 |
agccaatctcgatggagatgtt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1184758 |
agccaatctcgatggagatgtt |
1184737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 28 - 222
Target Start/End: Original strand, 16992867 - 16993061
Alignment:
| Q |
28 |
tatatttcatccttaatgtaactggacaatagatataactagctttatgatataaaatgtcacagtataagttagtgggattgcattacttacttcagga |
127 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16992867 |
tatatttcatccttaatgtaattgggcaatagatataactagctttatgatacaaaatgtcacagtataagttagtgggattgcattacttacttcagga |
16992966 |
T |
|
| Q |
128 |
tgttggtgcgggataattgaagctttttcactgcatcaaaaatttcctctcgcacatgtgaaatcnnnnnnncagccaatctcgatggagatgtt |
222 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16992967 |
tgttggtgcgggacaattgaagctttttcactgcatcaaaaattccctctggcacatgtgaaatctttttttcagccaatctcgatggagatgtt |
16993061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University