View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18407_high_6 (Length: 236)
Name: NF18407_high_6
Description: NF18407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18407_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 35321982 - 35321764
Alignment:
| Q |
1 |
gtattattgttgctttttcatttttggtaatttgaatgtttgtagttccacaaatacatgaaagttgttatatatatgttatttgtttaatttgcttcaa |
100 |
Q |
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| T |
35321982 |
gtattgttgttgctcttacattttttataagttgaatgtttgtagttccacaaatacatgaaagttgttatatatatgttatttgtttaatttccttcag |
35321883 |
T |
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| Q |
101 |
gtaatgaatggatcaaagtaattttatattggagtcaaattttgcannnnnnnnncattgtaattgtaaggaaagtgtgtagagctaggtagatggttca |
200 |
Q |
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| T |
35321882 |
gtaatgaatggaccaaagtaattttatattggagtcaaatcttgcattttttt----tttccattgtaaggaaagtgtgtagagctaggtagatggttca |
35321787 |
T |
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| Q |
201 |
tgttgtctttatatgttggaact |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
35321786 |
tgttgtctttatatgttggaact |
35321764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 35306981 - 35306771
Alignment:
| Q |
1 |
gtattattgttgctttttcatttttggtaatttgaatgtttgtagttccacaaatacatgaaagttgttatatatatgttatttgtttaatttgcttcaa |
100 |
Q |
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||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || |
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| T |
35306981 |
gtattgttgttactttttcatttttgataatttgaatgtttgtagttccacaaatacatgaaagttgttatatgtatgttatttgt----tttgctttaa |
35306886 |
T |
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| Q |
101 |
gtaatgaatggatcaaagtaattttatattggagtcaaattttgcannnnnnnnncattgtaattgtaaggaaagtgtgtagagctaggtagatggttca |
200 |
Q |
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|||||||| |||||||||||||||||| ||||| |||||| ||||| || | |||||||||||||||||||| |||||||||||||| |
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| T |
35306885 |
gtaatgaacggatcaaagtaattttatgttggattcaaatcttgcattttttt----ttttcattgtaaggaaagtgtgtag----aggtagatggttca |
35306794 |
T |
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| Q |
201 |
tgttgtctttatatgttggaact |
223 |
Q |
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|||||||||||||| |||||||| |
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| T |
35306793 |
tgttgtctttatatattggaact |
35306771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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