View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18407_low_2 (Length: 500)
Name: NF18407_low_2
Description: NF18407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18407_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 49871430 - 49870950
Alignment:
| Q |
1 |
ttactattattggtgatggtcccaaaaagaccatatttactggtagcaaaagctatggtgatggtgtgcagacttacaataccgcaacattcagtaagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871430 |
ttactattattggtgatggtcccaaaaagaccatatttactggtagcaaaagctatggtgatggtgtgcagacttacaataccgcaacattcagtaagtt |
49871331 |
T |
|
| Q |
101 |
actaatgcaatgtttaatatttagcatctgttcctaagttgtaagttgtaatgatcgatttgttattaatttgacaggtgtgaactctgcccatttcacg |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49871330 |
actaatgcaatgattaatatttagcatctgttcctaagttgtaagttgtaatgatcgatttgttattaatt-gacaggtgtgaactctgcccatttcacg |
49871232 |
T |
|
| Q |
201 |
gcctttaacgtcggattcgagaactcagccggtgccgcaaagcatcaagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgcgaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49871231 |
gcctttaacgtcggattcgagaactcagccggtgccgcaaagcatcaagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgtgaaa |
49871132 |
T |
|
| Q |
301 |
tgaacggttaccaagatacactctacacacaatccaaaagacaattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871131 |
tgaacggttaccaagatacactctacacacaatccaaaagacaattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagt |
49871032 |
T |
|
| Q |
401 |
tggagttttccaaaactgcaagctcgtcgttagaaaaccaatggcaactcaacaatgcatggtgacagcaggaggaagaacc |
482 |
Q |
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| T |
49871031 |
tggagttttccaaaactgcaaactcatcgttagaaaaccaatggcaactcaacaatgcatggtgacagcaggaggaagaacc |
49870950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 49865499 - 49865013
Alignment:
| Q |
1 |
ttactattattggtgatggtcccaaaaagaccatatttactggtagcaaaagctatggtgatggtgtgcagacttacaataccgcaacattcagtaagtt |
100 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49865499 |
ttactattattggcgatggtcccacaaagaccatatttactggcagcaaaagctatgctgatggtgtgcagacttacaataccgcaacattcggtaagtt |
49865400 |
T |
|
| Q |
101 |
acta----------atgcaatgtttaatatttagcatctgttcctaagttgtaagttgtaatgatcgatttgttattaatttgacaggtgtgaactctgc |
190 |
Q |
| |
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|||| |||||||||||||||| | |||| | || ||||||||||| |||| |||||||||||| | |||||||||||||||| |
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| T |
49865399 |
actactcaattttaatgcaatgtttaatat---ggatctctaaaaaa-ttgtaagttgtgtatatcgggttgttattaattgg-caggtgtgaactctgc |
49865305 |
T |
|
| Q |
191 |
ccatttcacggcctttaacgtcggattcgagaactcagccggtgccgcaaagcatcaagcagtggccctccgtgtaacagcagacaaagcattgttctac |
290 |
Q |
| |
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||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49865304 |
ccatttcaccgccttgaacgtcggatttgagaactcagccggtgccgcaaagcaccaagcagtggccctccgtgtaacagcagacaaagcattgttctac |
49865205 |
T |
|
| Q |
291 |
aactgcgaaatgaacggttaccaagatacactctacacacaatccaaaagacaattctaccgcgactgcaccattaccggaacaatcgactttgtctttg |
390 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| |
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| T |
49865204 |
aactgtcaaatggacggttaccaagatacactctacacacaatccaaaagacaattctaccgcgactgcactattagcggaacaattgactttgtctttg |
49865105 |
T |
|
| Q |
391 |
gtgatgcagttggagttttccaaaactgcaagctcgtcgttagaaaaccaatggcaactcaacaatgcatggtgacagcaggaggaagaacc |
482 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49865104 |
gtgatgctgttggagttttccaaaactgcaagctcgtcgttagaaaaccaatggcaaatcaacaatgcatggtgacagcaggaggaagaacc |
49865013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 244 - 421
Target Start/End: Original strand, 13967491 - 13967668
Alignment:
| Q |
244 |
atcaagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgcgaaatgaacggttaccaagatacactctacacacaatccaaaagaca |
343 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| ||||| | ||| ||||||| ||||| |||||| |||||| ||||||||| |||||| || | || |
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| T |
13967491 |
atcaagcagttgccctccgagtaacagcagatcaagcaatattccacaactgtcaaatggacggtttccaagacacactctacgtccaatcccaacgtca |
13967590 |
T |
|
| Q |
344 |
attctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaa |
421 |
Q |
| |
|
||||||||| |||||| |||| | || |||||||||||||| ||||| || || |||||||||||||||| ||||| |
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| T |
13967591 |
attctaccgtgactgcgccatctctggcacaatcgactttgtttttggcgacgcctttggagttttccaaaattgcaa |
13967668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 440
Target Start/End: Original strand, 13960326 - 13960523
Alignment:
| Q |
243 |
catcaagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgcgaaatgaacggttaccaagatacactctacacacaatccaaaagac |
342 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||||||| | |||||||||||| |||| | |||||||||| ||||||| | | ||||| || | | |
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|
| T |
13960326 |
catcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtc |
13960425 |
T |
|
| Q |
343 |
aattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaagctcgtcgttagaaaacca |
440 |
Q |
| |
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|||||||||| ||||||| ||| | || ||||||||| | ||| ||||| || ||| |||||||||||||||||| || |||| ||||||||| |
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|
| T |
13960426 |
aattctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaatcgtaagaaaacca |
13960523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 19394624 - 19394572
Alignment:
| Q |
306 |
ggttaccaagatacactctacacacaatccaaaagacaattctaccgcgactg |
358 |
Q |
| |
|
||||||||||| ||||| ||| ||||| || | |||||||||||||||||||| |
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| T |
19394624 |
ggttaccaagacacactatacgcacaaacccacagacaattctaccgcgactg |
19394572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 421
Target Start/End: Original strand, 37150614 - 37150693
Alignment:
| Q |
342 |
caattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaa |
421 |
Q |
| |
|
||||||||||| |||||||||||| | || || ||||||||||||||||| |||||| ||| |||||||||||||| |
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|
| T |
37150614 |
caattctaccgtgactgcaccatttcaggtaccatcgactttgtctttggcaatgcagaatcagtattccaaaactgcaa |
37150693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 421
Target Start/End: Original strand, 37159439 - 37159518
Alignment:
| Q |
342 |
caattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaa |
421 |
Q |
| |
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||||||||||| |||||||||||| | || || ||||||||||||||||| |||||| ||| |||||||||||||| |
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|
| T |
37159439 |
caattctaccgtgactgcaccatttcaggtaccatcgactttgtctttggcaatgcagaatcagtattccaaaactgcaa |
37159518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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