View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18407_low_6 (Length: 251)
Name: NF18407_low_6
Description: NF18407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18407_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 35307228 - 35307468
Alignment:
| Q |
1 |
attatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttgga |
100 |
Q |
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| T |
35307228 |
attatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttatcaaaacttgttgga |
35307327 |
T |
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| Q |
101 |
gtgagagtatcaagaggtgctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgt |
200 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35307328 |
gtgagagtatcaagtggtgctaaattggtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgt |
35307427 |
T |
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| Q |
201 |
atatgcgatttctgaaaaattggcactctccttggcctatg |
241 |
Q |
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| T |
35307428 |
atatgcgatttctgaaaaattggcactctccttggcctatg |
35307468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 35322229 - 35322469
Alignment:
| Q |
1 |
attatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
35322229 |
attatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaagatttttatagtaattgttgtcaaaatttgttgga |
35322328 |
T |
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| Q |
101 |
gtgagagtatcaagaggtgctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgt |
200 |
Q |
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| T |
35322329 |
gtgagagtgtcaagaggtgctaaattggtgtcaccaccagaaagaggacaatttaatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgt |
35322428 |
T |
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| Q |
201 |
atatgcgatttctgaaaaattggcactctccttggcctatg |
241 |
Q |
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| T |
35322429 |
atatgcgatttctgaaaaattggcactctccttggcctatg |
35322469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 35311571 - 35311814
Alignment:
| Q |
1 |
attatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttgga |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35311571 |
attatcttgagacccattattgaaaaggacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttgga |
35311670 |
T |
|
| Q |
101 |
gtgagagtatcaagaggtgctaaattagtgtca---ccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcat |
197 |
Q |
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| T |
35311671 |
gtgagagtatcaagtggtgctaaattggtgtcattgtcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcat |
35311770 |
T |
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| Q |
198 |
tgtatatgcgatttctgaaaaattggcactctccttggcctatg |
241 |
Q |
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| T |
35311771 |
tgtatatgcgagttctgaacaatcgacactctccttggcctatg |
35311814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 35289448 - 35289670
Alignment:
| Q |
19 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggt |
118 |
Q |
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|||||||||||||||||||||||| | ||| ||||| | |||||||||| ||||||||||||||||||||| | ||||| || || |||||||||| |
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| T |
35289448 |
attgaaaagagcttgatcagaatgaagaagtcctttattagcaacaaggtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggt |
35289547 |
T |
|
| Q |
119 |
gctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
218 |
Q |
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|| ||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| |
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| T |
35289548 |
gccaaatttatgtcaccaccagaagtaggacaatttgattttcttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatatacgagttctgaaaa |
35289647 |
T |
|
| Q |
219 |
attggcactctccttggcctatg |
241 |
Q |
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|||| || ||| |||| |||||| |
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| T |
35289648 |
attgacattctgcttgacctatg |
35289670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 35280103 - 35280325
Alignment:
| Q |
19 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggt |
118 |
Q |
| |
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||||||||| ||||||||||||| | ||| ||||| | ||||| || | |||| ||||||||||||||| | |||| || || ||||||||| |
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| T |
35280103 |
attgaaaagtgcttgatcagaattaagaagtcctttattagcaactagatccctataataattgttgtcaaaagtaacaggagagacagaatcaagagga |
35280202 |
T |
|
| Q |
119 |
gctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
218 |
Q |
| |
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|| ||||| |||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
35280203 |
gccaaatttgtgtcaccgccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgatttcggaaaa |
35280302 |
T |
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| Q |
219 |
attggcactctccttggcctatg |
241 |
Q |
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|||| || ||| ||||||||||| |
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| T |
35280303 |
attgacattctgcttggcctatg |
35280325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 35275336 - 35275545
Alignment:
| Q |
19 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttgtcaaaacttgttggagtgagagtatcaagaggt |
118 |
Q |
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|||||||||| ||||||||||||| | ||||||||| | |||| ||||| ||||| |||||||||||||| | |||||||||| || ||||| ||| |
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| T |
35275336 |
attgaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggt |
35275435 |
T |
|
| Q |
119 |
gctaaattagtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
218 |
Q |
| |
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|||||||| |||||||||||||| ||| |||||| ||| |||||||| || |||||| |||||||||||| |||||||| ||||||||||||||||| |
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| T |
35275436 |
gctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaa |
35275535 |
T |
|
| Q |
219 |
attggcactc |
228 |
Q |
| |
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|||| ||||| |
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| T |
35275536 |
attgacactc |
35275545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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