View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18408_high_1 (Length: 707)
Name: NF18408_high_1
Description: NF18408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18408_high_1 |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 10 - 673
Target Start/End: Original strand, 8058615 - 8059278
Alignment:
| Q |
10 |
catcatcaatgtcatctacaacagtaccattcaagcacatcacaggtacttcccttagcttcctgacacaaattaccaataagaagaatttggatccgct |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8058615 |
catcatcaatgtcatctacaacagtaccattcaagcacatcacaggtacttcccttagcttcctgacacaaattaccaataagaagaatttggatccgct |
8058714 |
T |
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| Q |
110 |
cgagttgatgcacgatgttgtagttgtagagaccgttagatttagagaaaatgtcagctaacaccgaagttcgatcaatcgattaagaacccctttattt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8058715 |
cgagttgatgcacgatgttgtagttgtagagaccgttagatttagagaaaatgtcagctaacaccgaagttcgatcaatcgattaagaacccctttattt |
8058814 |
T |
|
| Q |
210 |
tattttttcctacattactctttctaattacattgtgaagaatttcaatttgttgtttagaagtcttggattttgtttcttacttttgagtaatttgtga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8058815 |
tattttttcctacattactctttctaattacattgtgaagaatttcaatttgttgtttagaagtcttggattttgtttcttacttttgagtaatttgtga |
8058914 |
T |
|
| Q |
310 |
ctgtgagatgcaactatagtttaatttaatctgccaaatcacatgtgagatgtactctcaatgtttcaaaagatatggagacaataatcttttattagaa |
409 |
Q |
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| T |
8058915 |
ctgtgagatgcaactatagtttaatttaatctgccaaatcacatgtgagatgtactctcaatgtttcaaaagatatggagacaataatcttttattagaa |
8059014 |
T |
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| Q |
410 |
attccatgctaaccaattttgtttttcattctactaatgtatctgacatgatactgtcataattaatnnnnnnnnttgagtgatgagaattgagatggtc |
509 |
Q |
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| T |
8059015 |
attccatgctgaccaattttgtttttcattctactaatgtatctgacatgatactgtcataattaataaaaaaaattgagtgatgagaattgagatggtc |
8059114 |
T |
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| Q |
510 |
ctactcttctatacaatgcatctgtctaagagaaattgaagtgaatttgatatttcattttcttctctttacaagcctgtgaataagacatatcttgaat |
609 |
Q |
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| T |
8059115 |
ctactcttctatacaatgcatctgtctaagagacattgaagtgaatttgatatttcattttcttctctttacaagcctgtgaataagacatatcttgaat |
8059214 |
T |
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| Q |
610 |
caactttgtctcatgacagtcatatcctggattcctatggttgcaattatccctcatatatgta |
673 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
8059215 |
caacattgtctcatgacagtcatatcctggattcctatggttgcaattattcctcctatatgta |
8059278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 427 - 619
Target Start/End: Complemental strand, 10428908 - 10428722
Alignment:
| Q |
427 |
tttgtttttcattctactaatgtatctgacatgatactgtcataattaatnnnnnnnn---ttgagtgatgagaattgagatggtcctactcttctatac |
523 |
Q |
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||||||||||||| |||||||||||| ||||||| |||||| |||||||| |||||||||||||||||||||| || ||||||| ||| |
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| T |
10428908 |
tttgtttttcattttactaatgtatccgacatgacactgtcgtaattaataaaaaaaaaaattgagtgatgagaattgagatgctcatactctttcata- |
10428810 |
T |
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| Q |
524 |
aatgcatctgtctaagagaaattgaagtgaatttgatatttcattttcttctctttacaagcctgtgaataagacatatcttgaatcaactttgtc |
619 |
Q |
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| T |
10428809 |
--------tgtctaaaggacattgaagtgaatttgatatttcattttcttctctttacaagacgataaatgagacatatcttgaatcaacgttgtc |
10428722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 427 - 624
Target Start/End: Complemental strand, 34959 - 34767
Alignment:
| Q |
427 |
tttgtttttcattctactaatgtatctgacatgatactgtcataattaat----nnnnnnnnttgagtgatgagaattgagatggtcctactcttctata |
522 |
Q |
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| T |
34959 |
tttgtttttcattttactaatgtatccgacatgacacggtcgtaattaataaaaaaaaaaaattgagtgatgataattgagatggtcatactct------ |
34866 |
T |
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| Q |
523 |
caatgcatctgtctaagagaaattgaagtgaatttgatatttcattttcttctctttacaagcctgtgaataagacatatcttgaatcaactttgtctca |
622 |
Q |
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| ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||| ||||| || |
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| T |
34865 |
---ttcatatgtctaaaggacattgaagtgaatttgatatttcattttcttctctttacaagacgataaatgagacatatcttgaatcaacgttgtccca |
34769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 6188480 - 6188447
Alignment:
| Q |
124 |
atgttgtagttgtagagaccgttagatttagaga |
157 |
Q |
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| T |
6188480 |
atgttgtagttgtagagaccgttaaatttagaga |
6188447 |
T |
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