View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18408_high_12 (Length: 263)
Name: NF18408_high_12
Description: NF18408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18408_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 7500877 - 7501112
Alignment:
| Q |
11 |
atcatcaacaatatccatcaacttatccttatatcaaacgacaagtatcttcaccnnnnnnngatgcaatttggatgacataggcctataaattcaagtt |
110 |
Q |
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| T |
7500877 |
atcatcaacaatatccatcaacttatccttatatcaaacgacaagtatcttcaccaaaaaaagatgcaatttggatgacataagcctataaattcaagtt |
7500976 |
T |
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| Q |
111 |
acagatttgccatagcccccaaaacagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaatta |
210 |
Q |
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| T |
7500977 |
acagatttgccatagcccccaaaacagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaatta |
7501076 |
T |
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| Q |
211 |
atacaaataaatgaggcacatatcttagccaagcat |
246 |
Q |
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| T |
7501077 |
atacaaataaatgaggcacatatcttagccaagcat |
7501112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 8142590 - 8142358
Alignment:
| Q |
9 |
acatcatcaacaatatccatcaacttatccttatatcaaacgacaagtatcttcaccnnnnnnngatgcaatttggatgacataggcctataaattcaag |
108 |
Q |
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| T |
8142590 |
acatcatcaa-aatatccatcaatttatctttataccaaatgtcaagtatcttcaccaaaaaaagatgcaatttgtattacatatgcctatagattcaag |
8142492 |
T |
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| Q |
109 |
ttacagatttgccatagcccccaaaacagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaat |
208 |
Q |
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| T |
8142491 |
ttacagatttgtcatagcctccaaagcagctaatatgaattggggaagggattatgagatgaaggatgggccagagtcttgtgtcgatttgatgcaaaat |
8142392 |
T |
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| Q |
209 |
taatacaaataaatgaggcacatatcttagccaa |
242 |
Q |
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| T |
8142391 |
gaatataaataaatgaggcacacttcttagccaa |
8142358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 7498087 - 7498299
Alignment:
| Q |
9 |
acatcatcaacaatatccatcaacttatccttatatcaaacgacaagtatcttcaccnnnnnnngatgcaatttggatgacataggcctataaattcaag |
108 |
Q |
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|||||||||||| |||||||||| ||||||||||| |||| | |||||||||| ||| ||||||||||| || ||||| |||||| ||| ||| |
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| T |
7498087 |
acatcatcaacagtatccatcaatttatccttataccaaatgccaagtatcttgaccaaaaaaagatgcaatttgaattacatatacctatagattaaag |
7498186 |
T |
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| Q |
109 |
ttacagatttgccatagcccccaaaacagataatacgaattggggaagggattatcaagtgaaggaagagccagagaattgtgacgatttgatgcaaaat |
208 |
Q |
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| T |
7498187 |
ttacagatttgtcatagcctccaaagcagcaaatatgaattggggaagagattatgaggtgaaggatgagccagagacttgtgacgatttgatgcaaaat |
7498286 |
T |
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| Q |
209 |
taatacaaataaa |
221 |
Q |
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|||| ||||||| |
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| T |
7498287 |
gaatataaataaa |
7498299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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