View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18408_high_13 (Length: 239)
Name: NF18408_high_13
Description: NF18408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18408_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 39131888 - 39131687
Alignment:
| Q |
23 |
aacaaaactgtggcaatgaactctaaaaaactagtttgcatatgaaaacgtttctgcatatcaaatttaagcctttgagaaattaaaaatgaacaatata |
122 |
Q |
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| T |
39131888 |
aacaaaactgtggcaatgtactctaaaaaactagtttgcatatgaaaacgtttctgcatatcaaatttaagcctttgagaaattaaaaatgaacaatata |
39131789 |
T |
|
| Q |
123 |
caatagaaaggaaagaaagaatagtgacccaaagatagagatgaccctgttaattgctcatgagttttcattctttcagtaaaaacactatttgcctctc |
222 |
Q |
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| T |
39131788 |
caatagaaaggaaagaaagaatagtgacccaaagatagagatgaccctgttaattgctcatgagttttcattctttcagtaaaaacactatttgcctctc |
39131689 |
T |
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| Q |
223 |
tg |
224 |
Q |
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|| |
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| T |
39131688 |
tg |
39131687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 39125998 - 39125827
Alignment:
| Q |
21 |
caaacaaaactgtggcaatgaactctaaaaaactagtttgcatatgaaaacgtttctgcatatcaaatttaagcctttgagaaattaaaaatgaacaata |
120 |
Q |
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| T |
39125998 |
caaacaaaagtgtggca-tgtactctaaatagctaatttgtatatgaaaacatttatgcatatcaagtttaagcctttgagaaattaaaaacaaacaata |
39125900 |
T |
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| Q |
121 |
tacaatagaaaggaaagaaagaatagtgacccaaagatagagatgaccctgttaattgctcatgagttttcattctttc |
199 |
Q |
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| T |
39125899 |
tacaatag-----aaagaaagaacagtaagccaaagataaagatgaccctgttaattgatcttgaatttt-attctttc |
39125827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 199
Target Start/End: Original strand, 39470683 - 39470801
Alignment:
| Q |
82 |
atcaaatttaagcctttgagaaattaaaaatgaacaatatacaatagaaaggaaagaaagaatagtgacccaaagatagagatgaccctgttaa--ttgc |
179 |
Q |
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|||||| |||||||||||||||||||||||||||| || || || | || |||||||||| || ||||| ||||||||||||||||||| | |
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| T |
39470683 |
atcaaacttaagcctttgagaaattaaaaatgaactattatcatgagtta-gatagaaagaatacagaaccaaaaatagagatgaccctgttaactatta |
39470781 |
T |
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| Q |
180 |
tcatgagttttcattctttc |
199 |
Q |
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|||||||||||||||||||| |
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| T |
39470782 |
tcatgagttttcattctttc |
39470801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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